Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_N07
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 175 5e-45
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 99 2e-22
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 97 1e-21
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 82 6e-17
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 28 1.0
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 2.3
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 26 4.1
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 4.1
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 5.4
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 5.4
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 25 5.4
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.5
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 25 9.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 175 bits (425), Expect = 5e-45
Identities = 73/105 (69%), Positives = 89/105 (84%)
Frame = +2
Query: 224 RMDCTFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILLDLEPGTMD 403
++ FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYVPRA+L+DLEPGTMD
Sbjct: 15 QVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYVPRAVLVDLEPGTMD 74
Query: 404 SVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 538
+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDV
Sbjct: 75 AVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDV 119
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 99 bits (238), Expect = 2e-22
Identities = 44/100 (44%), Positives = 63/100 (63%), Gaps = 2/100 (2%)
Frame = +2
Query: 242 WEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGKYVPRAILLDLEPGTMDSVRS 415
WE+ EHGI P G + ++ Q + +++E GKYVPR+I +DLEP +D VR+
Sbjct: 21 WELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSIYVDLEPNVIDQVRT 80
Query: 416 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 535
GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 81 GPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 97.1 bits (231), Expect = 1e-21
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 6/104 (5%)
Frame = +2
Query: 242 WEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEASGGKYVPRAILLDLEPGTMD 403
WE+ EHGI P G H ++ + +++E GK+VPR+I +DLEP +D
Sbjct: 21 WELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSETGQGKFVPRSIYVDLEPNVID 80
Query: 404 SVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 535
VR+GP+ +F P+ V G+ A NN+A+GHYT G E++DSVL+
Sbjct: 81 QVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLE 124
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 81.8 bits (193), Expect = 6e-17
Identities = 34/102 (33%), Positives = 64/102 (62%), Gaps = 2/102 (1%)
Frame = +2
Query: 239 FWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILLDLEPGTMDSVRSG 418
FW+ + EHGI P G + ++R +V++ ++ +Y+PRAIL+DLEP ++++ S
Sbjct: 21 FWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSD 80
Query: 419 PFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 538
+G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 81 TYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 94 YILNQISRAYSTFGPYYINSSKNVYGYWIIFL--SNGKF 204
++L+ S Y PY I++ +Y +W++FL NG F
Sbjct: 1078 FLLSFYSLIYGAEKPYLIHNVVGLYFFWLLFLYAKNGFF 1116
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 416 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 517
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 144
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 194 FDKKIIQYP*TFLEELI*YGPKVEYA 117
FD +II +P +F ++ I GP +YA
Sbjct: 23 FDPEIIIFPTSFYKDTISVGPLAQYA 48
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 306 KSESPWYAPVGSMPCSSEMISQNVQSIRPSPSMVKFTIR*KDY 178
KS++ ++ P S+ S +I N SP + +FT K+Y
Sbjct: 35 KSKTTYHKPPSSIESVSTLIQPNKSQSVTSPYVKQFTFSSKEY 77
>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 98
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 36 ELIFFLFGPHRCIDFIKTWL 95
E IFFL+ HRC+ ++ +L
Sbjct: 79 ETIFFLYSLHRCVYYLFIYL 98
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 474 PAPDCPKTKLSGRNICPKGPERTESMVPGSRS 379
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 186 KDYPISIDIFRRINIVWTKSGI 121
K I +D+F RINIV+ +S I
Sbjct: 226 KPKKILVDLFHRINIVYFRSSI 247
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 441 GRNICPKGPERTESMVPGSRSRRMARGTYLP 349
G NI PER + +S RMAR LP
Sbjct: 106 GNNINYPTPERLQKSSASRKSGRMARSQELP 136
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 100 LNQISRAYSTFGPYYINSSKNV-YGYWIIFLSNGKF 204
L Q+ + FGP Y N N Y++ L G+F
Sbjct: 523 LYQLEKKIVAFGPRYFNPKNNTPTNYFLALLMCGEF 558
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,050
Number of Sequences: 5004
Number of extensions: 45681
Number of successful extensions: 133
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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