Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_N06
(208 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 29 0.064
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 26 0.78
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 1.8
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 23 4.2
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy... 23 7.3
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 23 7.3
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 22 9.6
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 22 9.6
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 22 9.6
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 22 9.6
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 22 9.6
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 29.5 bits (63), Expect = 0.064
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -3
Query: 137 KVKQSVRFWNALR--WTE*ARLYLPKDSSI 54
KVK+ R +NA+R W E R +PKD SI
Sbjct: 27 KVKRRKRLFNAIRKLWNERRRYRMPKDESI 56
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 0.78
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 139 QKLSSQFASGTRCDGLNELDFIFQKILQFAE 47
Q LSS + + + L ELDF Q++ F E
Sbjct: 39 QALSSSYEAEEKAKQLKELDFRLQQLSSFCE 69
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 24.6 bits (51), Expect = 1.8
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -2
Query: 195 FFEVIKNRHLMKYTYYNITKS*AVSSLLERVAMD*MSSTLSSKRFFNSLSNSPRT 31
FF+ + T + S A++S E A D +SST++ F S SNS T
Sbjct: 846 FFDASGFTSIYNGTKAGFSSSFALASNSESGASDVLSSTIAKPTFKFSTSNSGST 900
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 130 SSQFASGTRCDGLNELDFIFQKILQF 53
SS+ G C G+NEL+ +++L++
Sbjct: 531 SSKLKKGILCGGMNELNEPVREVLEW 556
>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 90 MSSTLSSKRFFNSLSNSPRT 31
+S TLSS R N L +SP+T
Sbjct: 235 ISDTLSSPRRRNPLLSSPKT 254
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 94 LNELDFIFQKILQFAE*FTQN 32
LN+ D IF+ +L FA+ ++ N
Sbjct: 355 LNDHDQIFESLLNFAKFYSTN 375
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/22 (31%), Positives = 16/22 (72%)
Frame = -2
Query: 198 FFFEVIKNRHLMKYTYYNITKS 133
FFF ++ + +++ ++ +ITKS
Sbjct: 3 FFFRLVSSFAILRISFLSITKS 24
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 22.2 bits (45), Expect = 9.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -2
Query: 168 LMKYTYYNITKS*AVSSLLERVAMD*MSSTLSSKRFFNSLSNSP 37
L YTYY T S S+ VA+D + + ++N ++ +P
Sbjct: 61 LQSYTYYTTTLSIGRPSISYTVAID-LDMPYTWLTYYNVMAFNP 103
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 127 CLTFGNVIISVFH*MSVLYY 186
C TFG+V++ + + +LYY
Sbjct: 408 CNTFGSVVLIFWIVVPILYY 427
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/40 (20%), Positives = 22/40 (55%)
Frame = -1
Query: 181 KEQTFNEIHLL*HYQKLSSQFASGTRCDGLNELDFIFQKI 62
+ + ++ +++ K + +FA T + + LDF++ K+
Sbjct: 1129 ENKKYDNVNIQKTLAKCAEEFAEHTNFNKVELLDFVYSKL 1168
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -2
Query: 87 SSTLSSKRFFNSLSNSPRTICSTLYFAS 4
S L KRF + NSP + Y A+
Sbjct: 188 SYLLKKKRFLKEVGNSPSAVYCRYYNAN 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 750,534
Number of Sequences: 5004
Number of extensions: 10999
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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