Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N06
         (208 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69658-2|CAB60997.1|  389|Caenorhabditis elegans Hypothetical pr...    29   0.45 
U59213-1|AAB09672.1|  363|Caenorhabditis elegans transmembrane p...    29   0.45 
Z69386-3|CAA93432.2|  322|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U64857-16|AAC25866.1|  123|Caenorhabditis elegans Hypothetical p...    25   5.6  
AC024798-1|AAK29914.3|  722|Caenorhabditis elegans Hypothetical ...    25   7.4  
AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin re...    25   9.7  

>Z69658-2|CAB60997.1|  389|Caenorhabditis elegans Hypothetical
           protein C36H8.2 protein.
          Length = 389

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -2

Query: 207 FFFFFFEVIKNRHLMKYTYYNITKS*AVSSLLERVAMD*MSSTLSSKRFFNSL 49
           F+  F  V+   +  K+ YY   K+ A  ++   ++   + ST+S  +FF++L
Sbjct: 282 FWLVFVAVVSTVNCFKWIYYLCNKTKAQKTIKNYLSTAPIKSTISDDQFFSAL 334


>U59213-1|AAB09672.1|  363|Caenorhabditis elegans transmembrane
           protein protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -2

Query: 207 FFFFFFEVIKNRHLMKYTYYNITKS*AVSSLLERVAMD*MSSTLSSKRFFNSL 49
           F+  F  V+   +  K+ YY   K+ A  ++   ++   + ST+S  +FF++L
Sbjct: 256 FWLVFVAVVSTVNCFKWIYYLCNKTKAQKTIKNYLSTAPIKSTISDDQFFSAL 308


>Z69386-3|CAA93432.2|  322|Caenorhabditis elegans Hypothetical
           protein ZK596.3 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 121 FASGTRCDGLNELDFIFQKILQFAE*FTQNYLQY 20
           F   T CD +      F +++ F   FT  YLQY
Sbjct: 256 FLVDTHCDSMALPSVAFSQLIYFLAFFTTGYLQY 289


>U64857-16|AAC25866.1|  123|Caenorhabditis elegans Hypothetical
           protein C37C3.10 protein.
          Length = 123

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 39  VNYSAN*RIFWKIKSSSFSPSQRVPEA 119
           VN+     IF++++SSS+S S RVP A
Sbjct: 65  VNFQPGTNIFFQLESSSYS-SMRVPVA 90


>AC024798-1|AAK29914.3|  722|Caenorhabditis elegans Hypothetical
           protein Y48G9A.10 protein.
          Length = 722

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 207 FFFFFFEVIKNRHLMKYTYYN 145
           FF  +  V   RH++KYTY++
Sbjct: 67  FFISYSLVFLLRHILKYTYFS 87


>AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin
           related protein 2 protein.
          Length = 654

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -2

Query: 105 VAMD*MSSTLSSKRFFNSLS--NSPRTIC 25
           +A +  SSTLSS   FNS+S  +S RT C
Sbjct: 626 IADEMFSSTLSSANRFNSVSMHSSIRTYC 654


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,056,561
Number of Sequences: 27780
Number of extensions: 57550
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 12,740,198
effective HSP length: 48
effective length of database: 11,406,758
effective search space used: 228135160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)