Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N06
         (208 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    19   4.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    19   4.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   8.2  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.4 bits (38), Expect = 4.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 189 EVIKNRHLMKYT 154
           +V+KN HL ++T
Sbjct: 199 QVVKNLHLPRFT 210


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.4 bits (38), Expect = 4.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 189 EVIKNRHLMKYT 154
           +V+KN HL ++T
Sbjct: 199 QVVKNLHLPRFT 210


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 140 PKVKQSVRFWNAL 102
           PKVK  +  WN L
Sbjct: 424 PKVKDCLISWNPL 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,889
Number of Sequences: 438
Number of extensions: 715
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2912559
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)