Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_N05
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 27 1.3
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 27 1.3
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch... 26 3.0
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 26 3.0
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 5.2
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 5.2
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 25 6.8
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa... 25 6.8
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 25 9.0
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 37 AAHNVARPGVAREGGGMGHAEY*RDLPLPGQ 129
+A+ + GV + GGG+ H + RDL L G+
Sbjct: 102 SAYGYLQVGVEKYGGGIWHTWFDRDLSLAGR 132
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 320 EKEGRYQVILKKVEVPAVDRNSCQERLRTTR 412
+KE RY+ + +VE +D ++ ER+R R
Sbjct: 576 DKENRYEPLTSEVEKEFIDLDALYERIRAER 606
>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
Cka1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 26.2 bits (55), Expect = 3.0
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 86 WDTQNIKEIFPYQD 127
WD +N++E+F YQD
Sbjct: 28 WDYENMQEVFGYQD 41
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +3
Query: 453 LEVNPARTPARET-GVLPWSVLWS 521
LE + P + T VLPWS +WS
Sbjct: 803 LEYSDPNDPTKATHSVLPWSAMWS 826
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = -2
Query: 496 TPVSLAGVLAGFTSSAHEGRVQLEKTSQPRSPKPLLTRVPIYSGNFHLLQYDLVTAFLFE 317
T + +A L +++ L K P + K + I+SGN ++ +
Sbjct: 4 TSIPIASTLLSLLAASGTLASPLHKRDDPLNNKQF-GLMSIHSGNSYVHLHPFYVGDSGA 62
Query: 316 LVLPPTRSKATCAIFSL 266
+ L PT +T A+FS+
Sbjct: 63 IYLDPTDGTSTSAVFSM 79
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = -2
Query: 496 TPVSLAGVLAGFTSSAHEGRVQLEKTSQPRSPKPLLTRVPIYSGNFHLLQYDLVTAFLFE 317
T + +A L +++ L K P + K + I+SGN ++ +
Sbjct: 4 TSIPIASTLLSLLAASGTLASPLHKRDDPLNNKQF-GLMSIHSGNSYVHLHPFYVGDSGA 62
Query: 316 LVLPPTRSKATCAIFSL 266
+ L PT +T A+FS+
Sbjct: 63 IYLDPTDGTSTSAVFSM 79
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 35 PQRITSQDQELRARAGE-WDTQNIKEIFPYQDREVESVVVHKD 160
P+ +T + G WD N+ ++ PY + V ++ +D
Sbjct: 484 PETVTEAISNYDSSTGRTWDICNLNKLHPYSGKPVSYKLISRD 526
>SPCC1259.07 |||transcriptional regulatory protein Rxt3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 351
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 510 QTKGEPPSPLQVSLPGSPPAHMKDECNWKRRPSLVVRSLS 391
Q+ GE + + S PG+P A D + + RPS + SLS
Sbjct: 120 QSSGEEEA--KYSHPGAPTATSADSISMESRPSNLSTSLS 157
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Frame = +2
Query: 62 ELRARAGEWDTQNIKEIFPYQDREVESVVVHKDFNGGNLFYDVGILFLKSPMELTPNVG- 238
+LR+++ + + + F ++ES ++H F ++ +D + L+ +EL G
Sbjct: 393 DLRSKSALFHAKLSRNKFFETSSDIESPIIHLRFKDKDISHDKQVFLLEEIVELCIAEGF 452
Query: 239 -LAXLPPYEE----KAKNGAR-CFATGWGKDKFEK 325
+A E K + R C +TG ++ EK
Sbjct: 453 LIARAKRVESLERVKVQPSLRICISTGHSAEEIEK 487
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,956
Number of Sequences: 5004
Number of extensions: 48443
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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