Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N05
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    50   1e-06
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    44   5e-05
AF039716-9|AAB96734.2|  548|Caenorhabditis elegans Hypothetical ...    37   0.010
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    30   1.2  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 2/128 (1%)
 Frame = +2

Query: 134 VESVVVHKDFN-GGNLFYDVGILFLKSPMELTPNVGLAXLPPYEEKAKNGARCFATGWGK 310
           V +V +H  +N G    YD  I+ +  P+  +       LP     A     C  TGWG 
Sbjct: 127 VTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLP--AVENRLCVVTGWGS 184

Query: 311 DKFEKEGRYQVILKKVEVPAVDRNSCQERLRTTRLGRLFQLHSSFMCAGGEPGK-DTCKG 487
              E        L+++ VP +    C        +GR+     S +CAG   GK D+C+G
Sbjct: 185 T-IEGSSLSAPTLREIHVPLLSTLFCSSL--PNYIGRIHL--PSMLCAGYSYGKIDSCQG 239

Query: 488 DGGSPLVC 511
           D G PL+C
Sbjct: 240 DSGGPLMC 247


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 5/152 (3%)
 Frame = +2

Query: 80  GEWD---TQNIKEIFPYQDREVESVVVHKDFNGGNLFYDVGILFLKSP-MELTPNVGLAX 247
           G+WD   T   ++IF  Q   +    ++KD       +D+ IL +  P +E         
Sbjct: 85  GDWDNNQTDGNEQIFYLQ--RIHFYPLYKDI----FSHDIAILEIPYPGIEFNEYAQPIC 138

Query: 248 LPPYEEKAKNGARCFATGWGKDKFEKEGRYQVILKKVEVPAVDRNSCQERLRTTRLGRLF 427
           LP  +     G +C  +GWG        R Q  L    +P ++R  C   + ++++    
Sbjct: 139 LPSKDFVYTPGRQCVVSGWGSMGLRYAERLQAAL----IPIINRFDC---VNSSQI--YS 189

Query: 428 QLHSSFMCAGG-EPGKDTCKGDGGSPLVCPME 520
            +  S  CAG  E G D+C+GD G P  C  E
Sbjct: 190 SMSRSAFCAGYLEGGIDSCQGDSGGPFACRRE 221


>AF039716-9|AAB96734.2|  548|Caenorhabditis elegans Hypothetical
           protein W03G9.7 protein.
          Length = 548

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = +2

Query: 80  GEWDTQNIKEIFPYQDREVESVVVHKDFNGGNLFYDVGILFLKSPMELTPNVGLAXLPPY 259
           G+WD + +KE   Y+D  V    V K+ N   + YD  +   +   + T N+       Y
Sbjct: 151 GQWDDRYLKEKAEYEDAMVRQETVQKELNIARVNYDNAVKIQEIYKQQTDNLNAL----Y 206

Query: 260 EEKAKNGARCFATGWGKDK 316
           EE+ K     F T +  +K
Sbjct: 207 EEQDKMLEAIFGTDYASEK 225


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
 Frame = +2

Query: 185 DVGILFLKSPMELTPNVGLAXLPPYEE-KAKNGARCFATGWGKDKFEKEGRYQVILKKVE 361
           D+ IL L+S ++       A LP   E   ++GA   + GWG D  +        + +V 
Sbjct: 177 DIVILELESTIDDVEGANYACLPFLPEVNIQSGANVTSFGWGSDPGKGFDNAAFPMIQVL 236

Query: 362 VPAVDR-NSCQERLRTTRLGRLFQLHSSFMCAGGEPGKDTCKGDGGSPL 505
             A +   +C+E   T+       +     C   E  K+ C GD G  L
Sbjct: 237 TLATETLATCEENWGTS-------IPFDSFCTAEEEDKNVCSGDSGGGL 278


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -2

Query: 517  HRTDQGRTPVSLAGVLAGFTSSAHEGRVQLEKTSQPRSPKPLLTRVP 377
            + TD  RT  +   + + +TS A E  VQ    ++ RSP+P ++ +P
Sbjct: 3013 YTTDSERTSTA-TDLSSSYTSDASESTVQSTVVNKRRSPQPPVSPIP 3058


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
 Frame = +2

Query: 224 TPNVGLAXLPPYEEKAKNGARCFATGWGKDKFEKEGRYQVILKKVEVPAVDRNSCQERLR 403
           T +V      P  +     + C+  GWGK +  K  +Y   ++++ V           L 
Sbjct: 140 TGSVNFKETAPLTQLQLETSVCYVAGWGKTE-NKTAKYSDSVRQMMV----------NLS 188

Query: 404 TTRLGRLFQLHSSFMCAGGEPGKD-TCKGDGGSPLVC 511
             R+G+       ++ A    G    C GD GSP+ C
Sbjct: 189 VRRIGK-----RKYLIAKAVTGSSRACMGDSGSPVYC 220


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -1

Query: 404 SEASPDTS--SDLQRELPPSSI*PGNGLPFRTCPSPNP*QS 288
           S  SP TS  S L  E  PSS          T PSPNP QS
Sbjct: 480 SSLSPSTSGMSTLTSEPSPSSTQSSGAQSTLTTPSPNPSQS 520


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -1

Query: 404 SEASPDTS--SDLQRELPPSSI*PGNGLPFRTCPSPNP*QS 288
           S  SP TS  S L  E  PSS          T PSPNP QS
Sbjct: 687 SSLSPSTSGMSTLTSEPSPSSTQSSGAQSTLTTPSPNPSQS 727


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -1

Query: 404 SEASPDTS--SDLQRELPPSSI*PGNGLPFRTCPSPNP*QS 288
           S  SP TS  S L  E  PSS          T PSPNP QS
Sbjct: 687 SSLSPSTSGMSTLTSEPSPSSTQSSGAQSTLTTPSPNPSQS 727


>Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical
           protein ZK757.1 protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -2

Query: 448 HEGRVQLEKTSQPRSPKPLLTRVPIYSGNFHLLQYDLVTAFLFELVLPPTRSKATCAI 275
           H  RVQL  +   +S  P+L  +P+  G+F     D     LFEL+      K +C I
Sbjct: 211 HRRRVQLTYSMLLQSMIPILVSIPLLVGSF-----DFYFGSLFELLWVIKCKKISCFI 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,403,071
Number of Sequences: 27780
Number of extensions: 305222
Number of successful extensions: 1114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)