Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_N04
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical pr... 208 2e-54
AF039052-8|AAF98631.1| 448|Caenorhabditis elegans Ruvb (recombi... 152 2e-37
AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical ... 42 2e-04
AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to ye... 42 2e-04
AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival... 42 3e-04
Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical pr... 41 7e-04
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 40 0.001
AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aa... 40 0.001
AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin pr... 40 0.001
Z75713-7|CAD56596.1| 475|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z75713-6|CAB00052.1| 472|Caenorhabditis elegans Hypothetical pr... 40 0.002
L25423-1|AAA28109.1| 472|Caenorhabditis elegans mei-1 protein. 40 0.002
AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome as... 40 0.002
AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog... 40 0.002
AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein. 40 0.002
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 39 0.002
U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical pr... 38 0.005
AF043693-4|AAB97538.1| 971|Caenorhabditis elegans Hypothetical ... 38 0.007
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 38 0.007
AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical ... 37 0.009
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 37 0.012
Z48334-5|CAA88312.1| 424|Caenorhabditis elegans Hypothetical pr... 36 0.020
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 36 0.020
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 36 0.020
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 36 0.027
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 36 0.027
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 36 0.027
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 36 0.027
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 36 0.027
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 36 0.027
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 36 0.027
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 36 0.027
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 35 0.035
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 35 0.035
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 35 0.035
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 35 0.047
Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical pr... 34 0.062
Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical pr... 34 0.062
Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical pr... 34 0.062
Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr... 34 0.062
L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical p... 34 0.062
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 34 0.062
Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical pr... 34 0.082
Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical pr... 34 0.082
AL031633-9|CAA21023.1| 636|Caenorhabditis elegans Hypothetical ... 34 0.082
U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division ... 33 0.11
U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna replic... 33 0.11
AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical ... 33 0.14
Z48583-2|CAA88471.2| 595|Caenorhabditis elegans Hypothetical pr... 32 0.25
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 32 0.33
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 31 0.44
AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna repl... 31 0.44
Z73906-3|CAE45047.1| 470|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z73906-2|CAA98115.1| 586|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical pr... 31 0.76
Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical p... 30 1.0
Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical p... 30 1.0
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 30 1.0
Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi... 30 1.3
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi... 30 1.3
Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 29 3.1
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z66565-10|CAB76415.1| 281|Caenorhabditis elegans Hypothetical p... 28 4.1
U88169-7|ABQ13064.1| 205|Caenorhabditis elegans Hypothetical pr... 28 4.1
U88169-6|AAB42236.2| 216|Caenorhabditis elegans Hypothetical pr... 28 4.1
AL032659-2|CAB82215.1| 281|Caenorhabditis elegans Hypothetical ... 28 4.1
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 27 7.1
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 27 7.1
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ... 27 7.1
Z81550-5|CAB04479.1| 881|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z81042-2|CAB02793.1| 458|Caenorhabditis elegans Hypothetical
protein C27H6.2 protein.
Length = 458
Score = 208 bits (508), Expect = 2e-54
Identities = 106/162 (65%), Positives = 130/162 (80%), Gaps = 2/162 (1%)
Frame = +1
Query: 85 IEEVKSTAKT-QRISAHTHIKGLGLD-ENGIPIQMAAGLVGQESAREAAGVVVDMIRSKK 258
IEEVK T K +RI+AH+H+KGLG+D E AAG VGQ AR AA +VVDMIR K
Sbjct: 20 IEEVKPTPKQIKRIAAHSHVKGLGIDTETQEAHYEAAGFVGQAPARTAASIVVDMIRLKC 79
Query: 259 MAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI 438
MAGRA+L+AGPP TGKTAIALA++QELG VPF P+V SEV+S E+KKTEVLM +FRRAI
Sbjct: 80 MAGRAVLIAGPPATGKTAIALAMSQELGDGVPFVPLVASEVFSNEVKKTEVLMRSFRRAI 139
Query: 439 GLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVIIGLK 564
GLR++ETK+VYEGEVTEL+PVE + + G GKT+SH+++ LK
Sbjct: 140 GLRVKETKDVYEGEVTELSPVEASDNS-GMGKTISHLVLSLK 180
>AF039052-8|AAF98631.1| 448|Caenorhabditis elegans Ruvb
(recombination protein) homologprotein 2 protein.
Length = 448
Score = 152 bits (368), Expect = 2e-37
Identities = 77/149 (51%), Positives = 102/149 (68%)
Frame = +1
Query: 94 VKSTAKTQRISAHTHIKGLGLDENGIPIQMAAGLVGQESAREAAGVVVDMIRSKKMAGRA 273
VK K +R S H+HI GLGL++ ++ G+VGQ +AR+AAG++V MI+ K+AGRA
Sbjct: 9 VKDIVKVERTSVHSHITGLGLNDRLEAEYVSGGMVGQVAARQAAGLIVKMIQEGKIAGRA 68
Query: 274 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIR 453
LL+ G PG GKTAIA+AI++ELG PF +V SE+YS EI KTE L + FRRA+G++I+
Sbjct: 69 LLVTGEPGAGKTAIAIAISKELGEDTPFVSIVASEIYSNEINKTEALTQAFRRALGIQIK 128
Query: 454 ETKEVYEGEVTELTPVETENPAGGYGKTV 540
E EV EGEV L E + A G G V
Sbjct: 129 EETEVLEGEVISL---EVDRSANGMGPKV 154
>AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical
protein Y48C3A.7 protein.
Length = 813
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN-FRRAIGL 444
+ +LL GPPG GKT +A A+A E G + F + G E+ + + ++E + F+RA
Sbjct: 569 QGILLCGPPGCGKTLLAKAVANETG--MNFISVKGPELLNMYVGESERAVRTVFQRA--- 623
Query: 445 RIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 552
R + ++ E+ L P + + G + V+ ++
Sbjct: 624 RDSQPCVIFFDEIDALVPKRSHGESSGGARLVNQLL 659
Score = 34.7 bits (76), Expect = 0.047
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 408
R ++ GPPG GKT A A+A EL +P + +E+ S +TE
Sbjct: 240 RGFIVHGPPGCGKTMFAQAVAGELA--IPMLQLAATELVSGVSGETE 284
>AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 4 protein.
Length = 430
Score = 42.3 bits (95), Expect = 2e-04
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Frame = +1
Query: 187 AGLVG-QESAREAAGVVV---DMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVP 354
AGL G +E+ +EA + + + + + +LL GPPGTGK+ IA A+A E G
Sbjct: 121 AGLEGAKEALKEAVILPIKFPQLFTGNRKPWQGILLFGPPGTGKSYIAKAVATEAGEST- 179
Query: 355 FCPMVGSEVYSTEIKKTEVLMEN 423
F + S++ S + ++E L++N
Sbjct: 180 FFSISSSDLMSKWLGESEKLVKN 202
>AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival
CED-4-interactingprotein MAC-1 protein.
Length = 813
Score = 41.9 bits (94), Expect = 3e-04
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMEN-FRRAIGL 444
+ +LL GPPG GKT +A A+A E G + F + G E+ + + ++E + F+RA
Sbjct: 569 QGILLCGPPGCGKTLLAKAVANETG--MNFFSVKGPELLNMYVGESERAVRTVFQRA--- 623
Query: 445 RIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 552
R + ++ E+ L P + + G + V+ ++
Sbjct: 624 RDSQPCVIFFDEIDALVPKRSHGESSGGARLVNQLL 659
Score = 34.7 bits (76), Expect = 0.047
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTE 408
R ++ GPPG GKT A A+A EL +P + +E+ S +TE
Sbjct: 240 RGFIVHGPPGCGKTMFAQAVAGELA--IPMLQLAATELVSGVSGETE 284
>Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical
protein M03C11.5 protein.
Length = 676
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 378
+ +LL GPPGTGKT +A AIA E +VPF GSE
Sbjct: 235 KGVLLVGPPGTGKTLLARAIAGE--AQVPFFHTAGSE 269
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/56 (46%), Positives = 33/56 (58%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 435
R +LL GPPGTGKT IA A+A E G+ F + G EV S ++E N R+A
Sbjct: 245 RGILLFGPPGTGKTLIARAVANETGSF--FFLINGPEVMSKMSGESE---SNLRKA 295
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQE 336
R +L GPPG GKT +A AIA E
Sbjct: 518 RGVLFYGPPGCGKTLLAKAIANE 540
>AC025715-1|ABJ99062.1| 747|Caenorhabditis elegans Paraplegin aaa
protease familyprotein 1 protein.
Length = 747
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 378
R LL GPPG GKT +A A+A E + VPF M GSE
Sbjct: 319 RGALLTGPPGCGKTLLAKALAAE--STVPFISMNGSE 353
>AB257343-1|BAE96353.1| 747|Caenorhabditis elegans paraplegin
protein.
Length = 747
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 378
R LL GPPG GKT +A A+A E + VPF M GSE
Sbjct: 319 RGALLTGPPGCGKTLLAKALAAE--STVPFISMNGSE 353
>Z75713-7|CAD56596.1| 475|Caenorhabditis elegans Hypothetical
protein T01G9.5b protein.
Length = 475
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +1
Query: 229 VVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQE 336
+V + + + +A++LAGPPGTGKT IA AIA E
Sbjct: 214 LVPEFFQGLRSPWKAMVLAGPPGTGKTLIARAIASE 249
>Z75713-6|CAB00052.1| 472|Caenorhabditis elegans Hypothetical
protein T01G9.5a protein.
Length = 472
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +1
Query: 229 VVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQE 336
+V + + + +A++LAGPPGTGKT IA AIA E
Sbjct: 214 LVPEFFQGLRSPWKAMVLAGPPGTGKTLIARAIASE 249
>L25423-1|AAA28109.1| 472|Caenorhabditis elegans mei-1 protein.
Length = 472
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +1
Query: 229 VVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQE 336
+V + + + +A++LAGPPGTGKT IA AIA E
Sbjct: 214 LVPEFFQGLRSPWKAMVLAGPPGTGKTLIARAIASE 249
>AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome
assembly factor protein6 protein.
Length = 720
Score = 39.5 bits (88), Expect = 0.002
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Frame = +1
Query: 217 EAAGVVVDMIRSKKMAGRAL-----LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 381
E V++ IR+ RAL +L G PG GKT IA A+A E K+ F + G E+
Sbjct: 472 ETKQTVLESIRTNLFGSRALKRSGIILYGSPGCGKTLIAKAVATEF--KIAFLSVKGPEL 529
Query: 382 YSTEIKKTEVLMENFRRAIGLRIRETKE--VYEGEVTELTPVETENPAGGYGKTVSHVI 552
+ + ++E EN R+ R ++ ++ E+ L P N G G + ++
Sbjct: 530 LNKYVGQSE---ENLRKVFE-RAKQASPCVIFFDEIDSLAPNRGRN--GDSGGVIDRIV 582
>AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog
protein.
Length = 720
Score = 39.5 bits (88), Expect = 0.002
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Frame = +1
Query: 217 EAAGVVVDMIRSKKMAGRAL-----LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 381
E V++ IR+ RAL +L G PG GKT IA A+A E K+ F + G E+
Sbjct: 472 ETKQTVLESIRTNLFGSRALKRSGIILYGSPGCGKTLIAKAVATEF--KIAFLSVKGPEL 529
Query: 382 YSTEIKKTEVLMENFRRAIGLRIRETKE--VYEGEVTELTPVETENPAGGYGKTVSHVI 552
+ + ++E EN R+ R ++ ++ E+ L P N G G + ++
Sbjct: 530 LNKYVGQSE---ENLRKVFE-RAKQASPCVIFFDEIDSLAPNRGRN--GDSGGVIDRIV 582
>AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein.
Length = 720
Score = 39.5 bits (88), Expect = 0.002
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Frame = +1
Query: 217 EAAGVVVDMIRSKKMAGRAL-----LLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 381
E V++ IR+ RAL +L G PG GKT IA A+A E K+ F + G E+
Sbjct: 472 ETKQTVLESIRTNLFGSRALKRSGIILYGSPGCGKTLIAKAVATEF--KIAFLSVKGPEL 529
Query: 382 YSTEIKKTEVLMENFRRAIGLRIRETKE--VYEGEVTELTPVETENPAGGYGKTVSHVI 552
+ + ++E EN R+ R ++ ++ E+ L P N G G + ++
Sbjct: 530 LNKYVGQSE---ENLRKVFE-RAKQASPCVIFFDEIDSLAPNRGRN--GDSGGVIDRIV 582
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/56 (44%), Positives = 32/56 (57%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 435
R +LL GPPGTGKT IA A+A E G F + G E+ S ++E N R+A
Sbjct: 244 RGILLFGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKMSGESE---SNLRKA 294
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQE 336
R +L GPPG GKT +A AIA E
Sbjct: 517 RGVLFYGPPGCGKTLLAKAIANE 539
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/56 (44%), Positives = 32/56 (57%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRA 435
R +LL GPPGTGKT IA A+A E G F + G E+ S ++E N R+A
Sbjct: 244 RGILLFGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKMSGESE---SNLRKA 294
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQE 336
R +L GPPG GKT +A AIA E
Sbjct: 517 RGVLFYGPPGCGKTLLAKAIANE 539
>U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical
protein C24B5.2a protein.
Length = 451
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +1
Query: 154 LDENGIPIQMAAGLVGQESAREAAGVVV----DMIRSKKMAGRALLLAGPPGTGKTAIAL 321
LD G+ + AG ++A E A ++ ++ + + + +LL GPPG GKT +A
Sbjct: 170 LDNTGVRMDDVAGCHSAKAALEEAVILPALNPNLFKGLRQPVKGILLFGPPGNGKTLLAK 229
Query: 322 AIAQE 336
A+A E
Sbjct: 230 AVAGE 234
>AF043693-4|AAB97538.1| 971|Caenorhabditis elegans Hypothetical
protein C34B2.6 protein.
Length = 971
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/57 (40%), Positives = 32/57 (56%)
Frame = +1
Query: 229 VVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIK 399
+ V+++R K + G+ L GPPG GKT+IA +IA L + F VG EIK
Sbjct: 494 IAVNLLR-KSIGGKILCFHGPPGVGKTSIAKSIATALNREY-FRFSVGGMTDVAEIK 548
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 378
+ +L GPPGTGKT +A A A E VPF + GSE
Sbjct: 327 KGAILTGPPGTGKTLLAKATAGE--ANVPFITVSGSE 361
>AL033514-5|CAA22082.1| 773|Caenorhabditis elegans Hypothetical
protein Y75B8A.4 protein.
Length = 773
Score = 37.1 bits (82), Expect = 0.009
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +1
Query: 250 SKKMAGRALLLAGPPGTGKTAIALAIAQELGTK 348
+ + G L GPPG GKT+IA AIA+ +G K
Sbjct: 324 NNSVKGMILCFTGPPGIGKTSIAKAIAESMGRK 356
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 36.7 bits (81), Expect = 0.012
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRAIGL 444
+ +LL GPPGTGKT +A A+A T+ F + GSE+ I + ++ E F A
Sbjct: 194 KGVLLFGPPGTGKTLLARAVAHH--TECTFIRVSGSELVQKFIGEGARMVRELFVMA--- 248
Query: 445 RIRETKEVYEGEVTELTPVETENPAGG 525
R ++ E+ + E +GG
Sbjct: 249 REHAPSIIFMDEIDSIGSSRVEGSSGG 275
>Z48334-5|CAA88312.1| 424|Caenorhabditis elegans Hypothetical
protein F10B5.5 protein.
Length = 424
Score = 35.9 bits (79), Expect = 0.020
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKV 351
R +LL GPPGTGKT++ +AQ L ++
Sbjct: 173 RLILLTGPPGTGKTSLCKGLAQHLSIRM 200
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 381
+ +LL GPPGTGKT +A A+A T+ F + GSE+
Sbjct: 189 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 224
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 381
+ +LL GPPGTGKT +A A+A T+ F + GSE+
Sbjct: 210 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 245
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 35.5 bits (78), Expect = 0.027
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 381
+ +LL GPPGTGKT A A+A T F ++GSE+
Sbjct: 212 KGVLLYGPPGTGKTLCARAVANR--TDACFIRVIGSEL 247
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 35.5 bits (78), Expect = 0.027
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 435
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E L F +A
Sbjct: 426 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQA 485
Query: 436 IGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 552
+R ++ E+ L PV + + VS ++
Sbjct: 486 YAMR---PSIIFFDEIDGLAPVRSSKQDQIHASIVSTLL 521
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 35.5 bits (78), Expect = 0.027
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 435
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E L F +A
Sbjct: 424 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQA 483
Query: 436 IGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 552
+R ++ E+ L PV + + VS ++
Sbjct: 484 YAMR---PSIIFFDEIDGLAPVRSSKQDQIHASIVSTLL 519
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 35.5 bits (78), Expect = 0.027
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 435
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E L F +A
Sbjct: 426 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQA 485
Query: 436 IGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 552
+R ++ E+ L PV + + VS ++
Sbjct: 486 YAMR---PSIIFFDEIDGLAPVRSSKQDQIHASIVSTLL 521
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 35.5 bits (78), Expect = 0.027
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 435
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E L F +A
Sbjct: 426 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQA 485
Query: 436 IGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 552
+R ++ E+ L PV + + VS ++
Sbjct: 486 YAMR---PSIIFFDEIDGLAPVRSSKQDQIHASIVSTLL 521
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 35.5 bits (78), Expect = 0.027
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 435
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E L F +A
Sbjct: 424 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQA 483
Query: 436 IGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 552
+R ++ E+ L PV + + VS ++
Sbjct: 484 YAMR---PSIIFFDEIDGLAPVRSSKQDQIHASIVSTLL 519
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 35.5 bits (78), Expect = 0.027
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 435
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E L F +A
Sbjct: 426 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQA 485
Query: 436 IGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 552
+R ++ E+ L PV + + VS ++
Sbjct: 486 YAMR---PSIIFFDEIDGLAPVRSSKQDQIHASIVSTLL 521
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
expression abnormal protein protein.
Length = 1291
Score = 35.5 bits (78), Expect = 0.027
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQEL---GTKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 435
+ ++ GPPGTGKT +A A+A E KV F G++ S + ++E L F +A
Sbjct: 426 KGVVFYGPPGTGKTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQA 485
Query: 436 IGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 552
+R ++ E+ L PV + + VS ++
Sbjct: 486 YAMR---PSIIFFDEIDGLAPVRSSKQDQIHASIVSTLL 521
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 35.1 bits (77), Expect = 0.035
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSE 378
R +L+ GPPG GKT +A A+A T F +VGSE
Sbjct: 196 RGVLMYGPPGCGKTMLAKAVA--ANTAASFIRVVGSE 230
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 35.1 bits (77), Expect = 0.035
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRA 435
+ LL GPPGTGKT +A A+A +L F +V S + I + ++ E F A
Sbjct: 177 KGCLLFGPPGTGKTLLARAVASQLDCN--FLKVVSSAIVDKYIGESARMIREMFNYA 231
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 35.1 bits (77), Expect = 0.035
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEI-KKTEVLMENFRRA 435
+ LL GPPGTGKT +A A+A +L F +V S + I + ++ E F A
Sbjct: 185 KGCLLFGPPGTGKTLLARAVASQLDCN--FLKVVSSAIVDKYIGESARMIREMFNYA 239
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 34.7 bits (76), Expect = 0.047
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 381
+ +L+ GPPGTGKT +A A+A + TK F + G ++
Sbjct: 212 KGVLMYGPPGTGKTMMARAVAAQ--TKSTFLKLAGPQL 247
>Z96100-7|CAB09531.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 34.3 bits (75), Expect = 0.062
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVP 354
R +LL GPPGTGKT +A I + L + P
Sbjct: 331 RGILLFGPPGTGKTLMARQIGKMLNAREP 359
>Z79698-2|CAB01976.1| 824|Caenorhabditis elegans Hypothetical
protein H15N14.2a protein.
Length = 824
Score = 34.3 bits (75), Expect = 0.062
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVP 354
R +LL GPPGTGKT +A I + L + P
Sbjct: 331 RGILLFGPPGTGKTLMARQIGKMLNAREP 359
>Z79698-1|CAL44963.1| 758|Caenorhabditis elegans Hypothetical
protein H15N14.2b protein.
Length = 758
Score = 34.3 bits (75), Expect = 0.062
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVP 354
R +LL GPPGTGKT +A I + L + P
Sbjct: 265 RGILLFGPPGTGKTLMARQIGKMLNAREP 293
>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical protein
C05A9.1 protein.
Length = 1283
Score = 34.3 bits (75), Expect = 0.062
Identities = 25/87 (28%), Positives = 41/87 (47%)
Frame = +1
Query: 196 VGQESAREAAGVVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGS 375
V E A+ + +++D + K AGR L L GP G+GK+ I + + F V
Sbjct: 1041 VSFEYAQRSDKMILDGVSLKLPAGRTLALVGPSGSGKSTIISLLER-------FYHAVDG 1093
Query: 376 EVYSTEIKKTEVLMENFRRAIGLRIRE 456
EV E +V + + R ++ L +E
Sbjct: 1094 EVKIDEENVVDVNLHHLRESVSLVSQE 1120
>L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical
protein F44B9.8 protein.
Length = 368
Score = 34.3 bits (75), Expect = 0.062
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +1
Query: 274 LLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVL---MENFRRAIGL 444
LL GPPGTGKT LA A+++ + MV E+ +++ + +V+ + NF + GL
Sbjct: 65 LLFYGPPGTGKTTTVLAAARQMYSPTKMASMV-LELNASDERGIDVVRNTIVNFAQTKGL 123
Query: 445 RIRET 459
+ T
Sbjct: 124 QAFST 128
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 34.3 bits (75), Expect = 0.062
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 381
+ ++L G PGTGKT +A A+A + T F +VGSE+
Sbjct: 223 KGVILYGCPGTGKTLLAKAVANQ--TSATFLRIVGSEL 258
>Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical
protein K04D7.2b protein.
Length = 339
Score = 33.9 bits (74), Expect = 0.082
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTK 348
R +LL GPPG GKT +A A+A+ G +
Sbjct: 115 RGILLYGPPGCGKTLLAKAVARAAGCR 141
>Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical
protein K04D7.2a protein.
Length = 342
Score = 33.9 bits (74), Expect = 0.082
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTK 348
R +LL GPPG GKT +A A+A+ G +
Sbjct: 118 RGILLYGPPGCGKTLLAKAVARAAGCR 144
>AL031633-9|CAA21023.1| 636|Caenorhabditis elegans Hypothetical
protein Y39A1A.12 protein.
Length = 636
Score = 33.9 bits (74), Expect = 0.082
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +1
Query: 211 AREAAGVVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYST 390
+RE + ++I K+ A+ ++G PGTGKTA A+ + V EV +
Sbjct: 274 SREIEKFIREVIDPKRGESSAMYISGVPGTGKTATVRAVVNSMKKSKKCQKFVYVEVNAM 333
Query: 391 EIKKT 405
KKT
Sbjct: 334 IFKKT 338
>U80437-18|AAB37629.1| 518|Caenorhabditis elegans Cell division
cycle related protein6 protein.
Length = 518
Score = 33.5 bits (73), Expect = 0.11
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 271 ALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRI 450
++ ++G PGTGKTA + + + LG V C + ST K L + ++ L
Sbjct: 197 SIYVSGQPGTGKTATTMRVLKSLGKSVRSCIV---NCASTNTK--SALFKTIFESLDLDG 251
Query: 451 RETKEVYEGEVTEL-TPV 501
+ +E++E V + TP+
Sbjct: 252 KPNEEIFEKHVKQFKTPL 269
>U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 4 protein.
Length = 334
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +1
Query: 274 LLLAGPPGTGKTAIALAIAQELGTK 348
LL GPPGTGKT+ ALA ++L K
Sbjct: 51 LLFYGPPGTGKTSAALAFCRQLFPK 75
>AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical
protein F32D1.1 protein.
Length = 594
Score = 33.1 bits (72), Expect = 0.14
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Frame = +1
Query: 187 AGLVGQESAREAAGVVV-------DMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGT 345
A + G E A++A +V D+ + + +LL GPPGTGKT I +A +
Sbjct: 316 ADVAGLEGAKKALREIVVLPFKRPDVFTGIRAPPKGVLLFGPPGTGKTMIGRCVASQ--C 373
Query: 346 KVPFCPMVGSEVYSTEIKKTEVLM 417
K F + S + S + + E L+
Sbjct: 374 KATFFNISASSLTSKWVGEGEKLV 397
>Z48583-2|CAA88471.2| 595|Caenorhabditis elegans Hypothetical
protein F54B3.3 protein.
Length = 595
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 214 REAAGVVVDMIRSKKMAG--RALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 381
R + + +K+ G R ++ GPPGTGKT A ++AQ G + + + G ++
Sbjct: 323 RRLRDIAITTSNTKRNNGLFRNVMFYGPPGTGKTLFAKSLAQHSG--LDYAVLTGGDI 378
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 31.9 bits (69), Expect = 0.33
Identities = 29/106 (27%), Positives = 49/106 (46%)
Frame = +1
Query: 235 VDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVL 414
V+ I+S G +++ GPPGTGKT +A+ I + P ++ + L
Sbjct: 811 VEAIKSGMQPGLTMVV-GPPGTGKTDVAVQIISNIYHNWP------NQRTLIVTHSNQAL 863
Query: 415 MENFRRAIGLRIRETKEVYEGEVTELTPVETENPAGGYGKTVSHVI 552
+ F + I L + E + G E +ETE YG+ V++V+
Sbjct: 864 NQLFEKIIALDVDERHLLRMGHGEE--ALETEKDFSRYGR-VNYVL 906
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 262 AGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEV 381
A + ++L G PGTGKT +A A+A T F GS++
Sbjct: 216 APKGVILYGEPGTGKTLLAKAVAN--STSATFIRATGSDL 253
>AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 2 protein.
Length = 334
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 274 LLLAGPPGTGKTAIALAIAQE-LGTKV 351
++L+GPPG GKT A+A+E LG KV
Sbjct: 46 IVLSGPPGCGKTTSVWALARELLGDKV 72
>Z73906-3|CAE45047.1| 470|Caenorhabditis elegans Hypothetical
protein D2030.2b protein.
Length = 470
Score = 31.1 bits (67), Expect = 0.58
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Frame = +1
Query: 247 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENF 426
+S ++ +LL GP G GKT + +A+ L + C + E +++
Sbjct: 135 QSVRLEKSNVLLVGPSGVGKTFLTQTLARVLDVPIALCDCTSMTQAGYVGEDVESVIQKL 194
Query: 427 RRAIGLRIRETKE--VYEGEVTELTPVETENPAGGY----GKTVSHVIIGL 561
+A G + + ++ V+ EV ++ E + Y G+ V H ++ L
Sbjct: 195 VQAAGGNVEKAQQGIVFLDEVDKIAAAH-EGHSAAYRDVSGEGVQHALLKL 244
>Z73906-2|CAA98115.1| 586|Caenorhabditis elegans Hypothetical
protein D2030.2a protein.
Length = 586
Score = 31.1 bits (67), Expect = 0.58
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Frame = +1
Query: 247 RSKKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFCPMVGSEVYSTEIKKTEVLMENF 426
+S ++ +LL GP G GKT + +A+ L + C + E +++
Sbjct: 251 QSVRLEKSNVLLVGPSGVGKTFLTQTLARVLDVPIALCDCTSMTQAGYVGEDVESVIQKL 310
Query: 427 RRAIGLRIRETKE--VYEGEVTELTPVETENPAGGY----GKTVSHVIIGL 561
+A G + + ++ V+ EV ++ E + Y G+ V H ++ L
Sbjct: 311 VQAAGGNVEKAQQGIVFLDEVDKIAAAH-EGHSAAYRDVSGEGVQHALLKL 360
>Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical
protein K08F4.1 protein.
Length = 850
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +1
Query: 178 QMAAGLVGQESAREAAGVVVDMIRSKKMAGRALLLAGPPGTGKTAIALAIAQELG 342
Q L+ +E + +D + ++ + + LLL+GP G GK+ +A +A++ G
Sbjct: 301 QKVDDLLASLGEKEREVLHMDNGKIRRPSSKMLLLSGPAGLGKSTLARIVARQAG 355
>Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical
protein C54G10.2 protein.
Length = 839
Score = 30.7 bits (66), Expect = 0.76
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKV 351
+A LL+G PG GKT A Q+LG ++
Sbjct: 341 KAALLSGSPGVGKTTCAYMACQQLGLQL 368
>Z49967-12|CAI70401.1| 396|Caenorhabditis elegans Hypothetical
protein F54C9.6b protein.
Length = 396
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKV 351
R L GPPGTGK++ A+A G V
Sbjct: 198 RGYLFYGPPGTGKSSFISALASHFGYSV 225
>Z49967-11|CAA90252.1| 442|Caenorhabditis elegans Hypothetical
protein F54C9.6a protein.
Length = 442
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALAIAQELGTKV 351
R L GPPGTGK++ A+A G V
Sbjct: 244 RGYLFYGPPGTGKSSFISALASHFGYSV 271
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 368 TIGQN-GTFVPSS*AIANAMAVLPVPGGPASNKALPAIFLLRIISTTTPAASLADSWPTR 192
++GQN VPS + + +V P PAS+ + P+I I +T P A + S P+
Sbjct: 1593 SVGQNIEVTVPSYFPVEQSKSVTQAPIPPASSPSAPSI---PSIPSTLPVAPSSSSVPSS 1649
Query: 191 PAA 183
P+A
Sbjct: 1650 PSA 1652
>Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical protein
T21E8.3 protein.
Length = 1243
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 232 VVDMIRSKKMAGRALLLAGPPGTGKTAI 315
V+D + K AG+ L + GP G+GK+ I
Sbjct: 1019 VLDSVNLKVEAGKTLAIVGPSGSGKSTI 1046
>Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical protein
T21E8.3 protein.
Length = 1243
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 232 VVDMIRSKKMAGRALLLAGPPGTGKTAI 315
V+D + K AG+ L + GP G+GK+ I
Sbjct: 1019 VLDSVNLKVEAGKTLAIVGPSGSGKSTI 1046
>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
nonsense-mediated mRNA decay trans-acting factor
protein.
Length = 1069
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 253 KKMAGRAL-LLAGPPGTGKTAIALAIAQELGTK 348
K++ R L L+ GPPGTGKT ++ I L K
Sbjct: 455 KQVLTRPLSLIQGPPGTGKTVVSATIVYHLVQK 487
>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 2 protein.
Length = 1069
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 253 KKMAGRAL-LLAGPPGTGKTAIALAIAQELGTK 348
K++ R L L+ GPPGTGKT ++ I L K
Sbjct: 455 KQVLTRPLSLIQGPPGTGKTVVSATIVYHLVQK 487
>Z47075-3|CAA87383.2| 182|Caenorhabditis elegans Hypothetical
protein E02H1.6 protein.
Length = 182
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 274 LLLAGPPGTGKTAIALAIAQELG 342
+L+ G PGTGK+ + +A++LG
Sbjct: 12 ILVTGSPGTGKSTLGQQVAEKLG 34
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 259 MAGRALLLAGPPGTGKTAIALAIAQELGTKV 351
+ + +LL G PG GK++ +A+AQ G +
Sbjct: 1347 LISKPILLEGAPGCGKSSTVMALAQLTGNPI 1377
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = +1
Query: 274 LLLAGPPGTGKTAIALAIAQELGTK---VPFCPMVGSEVYSTEIKKTEV--LMENFRR 432
LLL G G GKT++ A+A +G V P S+ K T + LME F +
Sbjct: 382 LLLVGETGVGKTSVVQAVADLIGVTLDVVNVSPTSDSDELIQGYKPTTIGRLMEPFTK 439
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
protein ZK1067.2 protein.
Length = 2219
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 277 LLAGPPGTGKTAIALAIAQEL 339
L+ GPPGTGKT I + I + +
Sbjct: 827 LIQGPPGTGKTHIGVQIVKTI 847
>Z66565-10|CAB76415.1| 281|Caenorhabditis elegans Hypothetical
protein Y71H9A.3 protein.
Length = 281
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 169 IPIQMAAGLVGQESAREAAGVVVDMIRSKKMAGRALL-LAGPPGTGKTAIALAIAQELGT 345
+PIQ+ + + A AAG + +++A RAL A T AI L Q L +
Sbjct: 195 LPIQLQRAMAAEAEAARAAGAKIIAAEGEQLASRALADAADVIATSPCAIQLRYLQTLNS 254
>U88169-7|ABQ13064.1| 205|Caenorhabditis elegans Hypothetical
protein T03F1.8b protein.
Length = 205
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Frame = +1
Query: 253 KKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFC-------PMVGSE----VYSTEIK 399
+KM R ++L+GP G GK+ I QE F P G E Y TE +
Sbjct: 9 RKMPCRPIVLSGPSGGGKSTILTRAMQEYPNSFAFSVSHTTRQPRAGEEHGKHYYFTEKE 68
Query: 400 KTEVLMEN 423
K + +++N
Sbjct: 69 KMQEMIKN 76
>U88169-6|AAB42236.2| 216|Caenorhabditis elegans Hypothetical
protein T03F1.8a protein.
Length = 216
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Frame = +1
Query: 253 KKMAGRALLLAGPPGTGKTAIALAIAQELGTKVPFC-------PMVGSE----VYSTEIK 399
+KM R ++L+GP G GK+ I QE F P G E Y TE +
Sbjct: 20 RKMPCRPIVLSGPSGGGKSTILTRAMQEYPNSFAFSVSHTTRQPRAGEEHGKHYYFTEKE 79
Query: 400 KTEVLMEN 423
K + +++N
Sbjct: 80 KMQEMIKN 87
>AL032659-2|CAB82215.1| 281|Caenorhabditis elegans Hypothetical
protein Y71H9A.3 protein.
Length = 281
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 169 IPIQMAAGLVGQESAREAAGVVVDMIRSKKMAGRALL-LAGPPGTGKTAIALAIAQELGT 345
+PIQ+ + + A AAG + +++A RAL A T AI L Q L +
Sbjct: 195 LPIQLQRAMAAEAEAARAAGAKIIAAEGEQLASRALADAADVIATSPCAIQLRYLQTLNS 254
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALA 324
+ L+L GPPG+GKT LA
Sbjct: 2531 KPLVLCGPPGSGKTMTLLA 2549
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 268 RALLLAGPPGTGKTAIALA 324
+ L+L GPPG+GKT LA
Sbjct: 2531 KPLVLCGPPGSGKTMTLLA 2549
>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
protein Y53F4B.9 protein.
Length = 1168
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 274 LLLAGPPGTGKTAIALAIAQELGTKV 351
L+L GP G GKTA+ A+A++ ++
Sbjct: 819 LVLIGPSGVGKTALFRALAKQENMRI 844
>Z81550-5|CAB04479.1| 881|Caenorhabditis elegans Hypothetical
protein F55F3.4 protein.
Length = 881
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = -3
Query: 117 LSFCSTLNF----FYLHFELIVVICFDYSVPRNAVHNL 16
LSF S L F F LHF ++ + F S+P +HNL
Sbjct: 843 LSFPSELFFLFQNFTLHFCVLPNLVFQTSIPLTIIHNL 880
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,361,522
Number of Sequences: 27780
Number of extensions: 255037
Number of successful extensions: 925
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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