Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N03
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c...    30   0.21 
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    27   2.6  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   4.6  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    25   8.1  

>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 81  VCCSFNKGNKRSCYRSNSFYYNRKRAKDYSRVFLT 185
           V C+ N+ N   CYRSN F ++     ++S VF+T
Sbjct: 113 VLCTLNEFNNPKCYRSNGFTFD-----NFSAVFIT 142


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 333 YLIVCWLINNNFLVGKPLIFFCTCEISILNN 425
           Y+++ W+++N FLVG  L       ISI NN
Sbjct: 793 YVVLTWILSNLFLVGIVLSIPKINGISISNN 823


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 308 SVSLIPNQLSDSLLANQQQLPSREAVDFLLHL-RNKHPEQF 427
           SVS  PN  S+S  ANQ  LPS         + R + PE F
Sbjct: 49  SVSGSPNSSSNSTPANQGSLPSHTNPQLYSSITRKERPELF 89


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 421 TISLTRKSSTARYKHISEAQSYSDISTRFKLQSRDT*SSGGIK 549
           T S ++KSS    +H++    +  +    KLQ+++  SS  +K
Sbjct: 207 TTSFSKKSSANMIRHLTVCNDFLQLGLNPKLQAKNQQSSVHLK 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,359
Number of Sequences: 5004
Number of extensions: 35564
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)