Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N03
         (582 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19550-1|CAA79610.1|  400|Homo sapiens N-acetyllactosaminide bet...    31   3.0  
L41607-1|AAA99832.1|  400|Homo sapiens beta-1,6-N-acetylglucosam...    31   3.0  
L19659-1|AAA81777.1|  400|Homo sapiens I beta 1-6 N-acetylglucos...    31   3.0  
BC074802-1|AAH74802.1|  400|Homo sapiens glucosaminyl (N-acetyl)...    31   3.0  
BC074801-1|AAH74801.1|  400|Homo sapiens glucosaminyl (N-acetyl)...    31   3.0  
AY435146-1|AAR95647.1|  400|Homo sapiens I-branching beta-1,6-ac...    31   3.0  
AL358777-3|CAI13999.1|  400|Homo sapiens glucosaminyl (N-acetyl)...    31   3.0  
AL139039-3|CAH73010.1|  400|Homo sapiens glucosaminyl (N-acetyl)...    31   3.0  
AF458025-1|AAM73865.1|  400|Homo sapiens I beta-1,6-N-acetylgluc...    31   3.0  
AF401653-1|AAL50562.1|  400|Homo sapiens N-acetyllactosaminide b...    31   3.0  
AF401652-1|AAL50561.1|  400|Homo sapiens N-acetyllactosaminide b...    31   3.0  

>Z19550-1|CAA79610.1|  400|Homo sapiens N-acetyllactosaminide
           beta-1,6-N-acetylglucosaminyltransferase protein.
          Length = 400

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 81  VCCSFNKGNKRSCYRSNSFYYNRKRAKDY---SRVFLTKHNKEGNSFKLIDM*IIFHYRK 251
           VC SF  G  R  +++    + +   K+Y   S       +KE   F L  + +I H+  
Sbjct: 47  VCTSFINGKTRFLWKNKLMIHEKSSCKEYLTQSHYITAPLSKEEADFPLAYIMVIHHHFD 106

Query: 252 TFSRV 266
           TF+R+
Sbjct: 107 TFARL 111


>L41607-1|AAA99832.1|  400|Homo sapiens
           beta-1,6-N-acetylglucosaminyltransferase protein.
          Length = 400

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 81  VCCSFNKGNKRSCYRSNSFYYNRKRAKDY---SRVFLTKHNKEGNSFKLIDM*IIFHYRK 251
           VC SF  G  R  +++    + +   K+Y   S       +KE   F L  + +I H+  
Sbjct: 47  VCTSFINGKTRFLWKNKLMIHEKSSCKEYLTQSHYITAPLSKEEADFPLAYIMVIHHHFD 106

Query: 252 TFSRV 266
           TF+R+
Sbjct: 107 TFARL 111


>L19659-1|AAA81777.1|  400|Homo sapiens I beta 1-6
           N-acetylglucosaminyltransferase protein.
          Length = 400

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 81  VCCSFNKGNKRSCYRSNSFYYNRKRAKDY---SRVFLTKHNKEGNSFKLIDM*IIFHYRK 251
           VC SF  G  R  +++    + +   K+Y   S       +KE   F L  + +I H+  
Sbjct: 47  VCTSFINGKTRFLWKNKLMIHEKSSCKEYLTQSHYITAPLSKEEADFPLAYIMVIHHHFD 106

Query: 252 TFSRV 266
           TF+R+
Sbjct: 107 TFARL 111


>BC074802-1|AAH74802.1|  400|Homo sapiens glucosaminyl (N-acetyl)
           transferase 2, I-branching enzyme (I blood group)
           protein.
          Length = 400

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 81  VCCSFNKGNKRSCYRSNSFYYNRKRAKDY---SRVFLTKHNKEGNSFKLIDM*IIFHYRK 251
           VC SF  G  R  +++    + +   K+Y   S       +KE   F L  + +I H+  
Sbjct: 47  VCTSFINGKTRFLWKNKLMIHEKSSCKEYLTQSHYITAPLSKEEADFPLAYIMVIHHHFD 106

Query: 252 TFSRV 266
           TF+R+
Sbjct: 107 TFARL 111


>BC074801-1|AAH74801.1|  400|Homo sapiens glucosaminyl (N-acetyl)
           transferase 2, I-branching enzyme, isoform B protein.
          Length = 400

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 81  VCCSFNKGNKRSCYRSNSFYYNRKRAKDY---SRVFLTKHNKEGNSFKLIDM*IIFHYRK 251
           VC SF  G  R  +++    + +   K+Y   S       +KE   F L  + +I H+  
Sbjct: 47  VCTSFINGKTRFLWKNKLMIHEKSSCKEYLTQSHYITAPLSKEEADFPLAYIMVIHHHFD 106

Query: 252 TFSRV 266
           TF+R+
Sbjct: 107 TFARL 111


>AY435146-1|AAR95647.1|  400|Homo sapiens I-branching
           beta-1,6-acetylglucosaminyltransferase family
           polypeptide 2 protein.
          Length = 400

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 81  VCCSFNKGNKRSCYRSNSFYYNRKRAKDY---SRVFLTKHNKEGNSFKLIDM*IIFHYRK 251
           VC SF  G  R  +++    + +   K+Y   S       +KE   F L  + +I H+  
Sbjct: 47  VCTSFINGKTRFLWKNKLMIHEKSSCKEYLTQSHYITAPLSKEEADFPLAYIMVIHHHFD 106

Query: 252 TFSRV 266
           TF+R+
Sbjct: 107 TFARL 111


>AL358777-3|CAI13999.1|  400|Homo sapiens glucosaminyl (N-acetyl)
           transferase 2, I-branching enzyme (I blood group)
           protein.
          Length = 400

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 81  VCCSFNKGNKRSCYRSNSFYYNRKRAKDY---SRVFLTKHNKEGNSFKLIDM*IIFHYRK 251
           VC SF  G  R  +++    + +   K+Y   S       +KE   F L  + +I H+  
Sbjct: 47  VCTSFINGKTRFLWKNKLMIHEKSSCKEYLTQSHYITAPLSKEEADFPLAYIMVIHHHFD 106

Query: 252 TFSRV 266
           TF+R+
Sbjct: 107 TFARL 111


>AL139039-3|CAH73010.1|  400|Homo sapiens glucosaminyl (N-acetyl)
           transferase 2, I-branching enzyme (I blood group)
           protein.
          Length = 400

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 81  VCCSFNKGNKRSCYRSNSFYYNRKRAKDY---SRVFLTKHNKEGNSFKLIDM*IIFHYRK 251
           VC SF  G  R  +++    + +   K+Y   S       +KE   F L  + +I H+  
Sbjct: 47  VCTSFINGKTRFLWKNKLMIHEKSSCKEYLTQSHYITAPLSKEEADFPLAYIMVIHHHFD 106

Query: 252 TFSRV 266
           TF+R+
Sbjct: 107 TFARL 111


>AF458025-1|AAM73865.1|  400|Homo sapiens I
           beta-1,6-N-acetylglucosaminyltransferase B form protein.
          Length = 400

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 81  VCCSFNKGNKRSCYRSNSFYYNRKRAKDY---SRVFLTKHNKEGNSFKLIDM*IIFHYRK 251
           VC SF  G  R  +++    + +   K+Y   S       +KE   F L  + +I H+  
Sbjct: 47  VCTSFINGKTRFLWKNKLMIHEKSSCKEYLTQSHYITAPLSKEEADFPLAYIMVIHHHFD 106

Query: 252 TFSRV 266
           TF+R+
Sbjct: 107 TFARL 111


>AF401653-1|AAL50562.1|  400|Homo sapiens N-acetyllactosaminide
           beta-1,6-N-acetylglucosaminyltransferase protein.
          Length = 400

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 81  VCCSFNKGNKRSCYRSNSFYYNRKRAKDY---SRVFLTKHNKEGNSFKLIDM*IIFHYRK 251
           VC SF  G  R  +++    + +   K+Y   S       +KE   F L  + +I H+  
Sbjct: 47  VCTSFINGKTRFLWKNKLMIHEKSSCKEYLTQSHYITAPLSKEEADFPLAYIMVIHHHFD 106

Query: 252 TFSRV 266
           TF+R+
Sbjct: 107 TFARL 111


>AF401652-1|AAL50561.1|  400|Homo sapiens N-acetyllactosaminide
           beta-1,6-N-acetylglucosaminyltransferase protein.
          Length = 400

 Score = 31.1 bits (67), Expect = 3.0
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 81  VCCSFNKGNKRSCYRSNSFYYNRKRAKDY---SRVFLTKHNKEGNSFKLIDM*IIFHYRK 251
           VC SF  G  R  +++    + +   K+Y   S       +KE   F L  + +I H+  
Sbjct: 47  VCTSFINGKTRFLWKNKLMIHEKSSCKEYLTQSHYITAPLSKEEADFPLAYIMVIHHHFD 106

Query: 252 TFSRV 266
           TF+R+
Sbjct: 107 TFARL 111


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,075,778
Number of Sequences: 237096
Number of extensions: 1074550
Number of successful extensions: 2100
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2100
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6042162242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)