Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N03
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p...    30   1.4  
AF125459-11|AAD12842.2|  315|Caenorhabditis elegans Serpentine r...    28   4.2  
AY079165-1|AAL86012.1|  585|Caenorhabditis elegans NADPH-depende...    27   7.4  
AL132858-12|CAB60480.1|  585|Caenorhabditis elegans Hypothetical...    27   7.4  
AC006816-6|ABA00154.1|  506|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical protein
            T11G6.5 protein.
          Length = 1406

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
 Frame = +2

Query: 335  SDSLLANQQQLPSREAVDFLLHLRNKHPEQFPLQENHLPQGISTFLKP-----NPTQIF- 496
            SD     ++ LPS  +   ++     HP Q  +Q    P GIS   +P      P+Q F 
Sbjct: 1116 SDDESRERKNLPSTSSSSVIILSPPPHPSQKKIQPPVAPPGISNLNRPGNNYSGPSQSFR 1175

Query: 497  ---QQGLSFNHAIPNQVGGLNQNTR 562
               Q   +FNH  P    G N   R
Sbjct: 1176 PNQQYNPNFNHQRPPFQFGFNPRGR 1200


>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
            protein T11G6.5 protein.
          Length = 1406

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
 Frame = +2

Query: 335  SDSLLANQQQLPSREAVDFLLHLRNKHPEQFPLQENHLPQGISTFLKP-----NPTQIF- 496
            SD     ++ LPS  +   ++     HP Q  +Q    P GIS   +P      P+Q F 
Sbjct: 1116 SDDESRERKNLPSTSSSSVIILSPPPHPSQKKIQPPVAPPGISNLNRPGNNYSGPSQSFR 1175

Query: 497  ---QQGLSFNHAIPNQVGGLNQNTR 562
               Q   +FNH  P    G N   R
Sbjct: 1176 PNQQYNPNFNHQRPPFQFGFNPRGR 1200


>AF125459-11|AAD12842.2|  315|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 24 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 81  VCCSFNKGNKRSCYRSNSFYY 143
           +C  F   NK   YRSNSFYY
Sbjct: 50  ICAIFKSKNKEK-YRSNSFYY 69


>AY079165-1|AAL86012.1|  585|Caenorhabditis elegans NADPH-dependent
           flavin reductase protein.
          Length = 585

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 359 QQLPSREAVDFLLHLRNKHPEQFPLQENHLPQGISTFL 472
           QQ+P R   + L +     PE+  LQE   P+G+  +L
Sbjct: 312 QQVPKRSFFEMLGYYSTNPPEKERLQELASPEGLDDYL 349


>AL132858-12|CAB60480.1|  585|Caenorhabditis elegans Hypothetical
           protein Y113G7A.8 protein.
          Length = 585

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 359 QQLPSREAVDFLLHLRNKHPEQFPLQENHLPQGISTFL 472
           QQ+P R   + L +     PE+  LQE   P+G+  +L
Sbjct: 312 QQVPKRSFFEMLGYYSTNPPEKERLQELASPEGLDDYL 349


>AC006816-6|ABA00154.1|  506|Caenorhabditis elegans Hypothetical
           protein Y71D11A.1 protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 58  KNSRRTITFVAVSTKATRGVVTEATVFITTERGPKTT 168
           +NSR++ TF+ +  K+    + + TV  TT   P+TT
Sbjct: 244 ENSRKSTTFINLVEKSPNLALPKTTVAPTTTTVPRTT 280


>Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical
           protein T07C5.1c protein.
          Length = 523

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 387 IFFCTCEISILNNFPYKKIIYRK 455
           +FF  C IS+LN   Y+KI  RK
Sbjct: 498 LFFYLCIISLLNFVVYRKIFKRK 520


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,325,772
Number of Sequences: 27780
Number of extensions: 196322
Number of successful extensions: 586
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)