Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N03
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          25   0.72 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.9  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   8.9  

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +3

Query: 90  SFNKGNKRSCYRSNSFYYNRKRAKDYSRVFLTKHNKEGNS 209
           S+    +RSC R  S  Y + R  D       KH +E  S
Sbjct: 244 SYRNDGERSCSRDRSREYKKDRRYDQLHNVEEKHLRERTS 283


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 73  TITFVAVSTKATRGVVTEATVFITTERGPKTT 168
           TIT +  +T  T    T  T   TT+    TT
Sbjct: 657 TITTITTTTTTTTTTTTTTTTPNTTQNASATT 688


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 321 YLINYLIVCWLINNNFLVGKPL 386
           YL ++++VC  ++  + V KPL
Sbjct: 123 YLSSFVLVCISMDRYYAVIKPL 144


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 93  FNKGNKRSCYRSNSFYYNRKRAKDYSRVFLTKHNKEGNSFKL 218
           F+  + +S Y SNS    +K     + VF   H  +GN+  +
Sbjct: 32  FDLSDLKSMYESNSEEQMKKLGCFEACVFQKLHFMDGNTLNV 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,907
Number of Sequences: 438
Number of extensions: 2391
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)