Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_N02
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558... 33 0.18
02_05_0780 - 31705605-31705754,31705858-31706191,31706306-317064... 31 0.41
02_04_0047 + 19222640-19223062 25 0.82
02_05_0999 + 33405982-33408279,33408356-33408466,33408551-334087... 28 3.8
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 27 6.7
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311... 27 6.7
03_06_0391 - 33577872-33578093,33578556-33579218 27 6.7
09_02_0206 - 5783868-5783986,5784422-5784485,5784552-5784620,578... 27 8.8
02_01_0680 + 5054306-5056411,5057200-5057243,5057549-5057664,505... 27 8.8
>02_05_0308 -
27754340-27754634,27755591-27755696,27755781-27755855,
27756039-27757410
Length = 615
Score = 32.7 bits (71), Expect = 0.18
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = +3
Query: 144 TTHQLALDLSAALRPP------YVGLRPRHELDTNPRTSILIL*MLV*VRQKR 284
+T LALDLSA LR P +GL PRH L PRT ++ L V Q+R
Sbjct: 93 STLDLALDLSARLRRPRQLTNSILGLFPRHRLAFTPRTFPILFERLA-VSQRR 144
>02_05_0780 -
31705605-31705754,31705858-31706191,31706306-31706478,
31706615-31706810,31707864-31708777
Length = 588
Score = 31.5 bits (68), Expect = 0.41
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 50 RSYQSMTMIQNFP-NSDLELVAGDVLAKVRSEHNSPIGSRS 169
R YQ +IQ P N D++ +V AK+RS+ N I SRS
Sbjct: 548 RDYQ--VLIQELPENEDMKKALSEVEAKLRSQRNGGIASRS 586
>02_04_0047 + 19222640-19223062
Length = 140
Score = 25.4 bits (53), Expect(2) = 0.82
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +2
Query: 467 GWPWPW 484
GWPWPW
Sbjct: 62 GWPWPW 67
Score = 23.8 bits (49), Expect(2) = 0.82
Identities = 5/6 (83%), Positives = 6/6 (100%)
Frame = +2
Query: 470 WPWPWQ 487
WPWPW+
Sbjct: 65 WPWPWE 70
>02_05_0999 +
33405982-33408279,33408356-33408466,33408551-33408703,
33408870-33409033,33409113-33409210,33409296-33409474,
33409588-33409675,33410285-33410451
Length = 1085
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 487 LPRPWPAPRHLIQYPAVPFDRLPQSGDVRLQPGQG 383
+P PWP+P I Y V D +P + R P G
Sbjct: 547 IPNPWPSPNGSIPYRVVGHD-IPAVVENRSNPNSG 580
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 380 GTLARLEADVAALRKAVEGDRRILDQVSGGWPWPWQ 487
GTL E V +K +G + +Q WPW W+
Sbjct: 731 GTLVGEEGGVWTRKKEEQGRKVAANQRQRLWPWDWE 766
>05_03_0645 +
16529635-16529794,16530188-16530312,16531100-16531173,
16531961-16532006,16532638-16532730,16534429-16535886
Length = 651
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 490 LLPRPWPAPRHLIQYPAVP 434
LLP P P P L+ YP+VP
Sbjct: 180 LLPLPPPPPPELVVYPSVP 198
>03_06_0391 - 33577872-33578093,33578556-33579218
Length = 294
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +2
Query: 257 DVSISETEAPVQQRPAPRLSNGRAHQITSQLTHLKVLEQLPGTLARLEADVAALRKAVEG 436
+V I+ E ++ + L +T QLT K+ EQ L R + D+A R+ E
Sbjct: 199 EVVINGWETEQVEKASAWLKKIEVFLMTEQLTQRKLDEQRAKALERTQNDIAKARRKAEE 258
Query: 437 DR 442
R
Sbjct: 259 KR 260
>09_02_0206 -
5783868-5783986,5784422-5784485,5784552-5784620,
5784698-5784940,5786844-5786912,5786988-5787212,
5787289-5787532,5787607-5787716,5787948-5788016,
5788988-5789042,5789063-5789097,5789422-5789514,
5789545-5789595
Length = 481
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 387 WPGWRRTSPL*GRRSKGT 440
WPG R SP GRRS+ T
Sbjct: 21 WPGHARASPAGGRRSRWT 38
>02_01_0680 +
5054306-5056411,5057200-5057243,5057549-5057664,
5057942-5058036
Length = 786
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -1
Query: 484 PRPWPAPRHLIQYPAVPFDRLPQSGDVRLQPGQGSR*LFQHLQMC 350
P PWP PR ++ A RL SG + L P +R L L C
Sbjct: 3 PAPWPTPR-TVRQAAELHARLTTSGHLLLHP-PSARHLLNSLVNC 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,082,061
Number of Sequences: 37544
Number of extensions: 261507
Number of successful extensions: 987
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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