Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_N02
(514 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr... 28 3.4
U39678-7|AAK39210.1| 193|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical ... 27 6.0
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 7.9
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ... 27 7.9
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 7.9
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 7.9
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 7.9
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 7.9
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 7.9
>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
protein F07A11.4 protein.
Length = 1095
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 22 TMSYSSD--VASFLSVDDDDPEFPEQRSRACRRRC 120
T+SYS++ VA FLSV + P + RAC C
Sbjct: 626 TVSYSTEGTVADFLSVVSETVRVPTRNLRACEAIC 660
>U39678-7|AAK39210.1| 193|Caenorhabditis elegans Hypothetical
protein C39D10.5 protein.
Length = 193
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Frame = -1
Query: 511 HQRRRAQLLPRPWP-----APRHLIQYPAVPF 431
HQ + +P P+P APR +IQYP +P+
Sbjct: 131 HQLAQKYGVPTPYPNGTASAPRLMIQYPGLPY 162
>AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical
protein F55A12.8 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +3
Query: 6 RQNS*NDVIQFRCCLVLXXXXXXXXXXXXXXXXLSPAMYWRKFGQNTTHQLALDLSA 176
RQNS ND+ C++L +YWR+F + + L+ D S+
Sbjct: 732 RQNS-NDITGEHTCIILKGLEHGGSDSDEEPSATWLPVYWREFRRRIVNLLSFDFSS 787
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/79 (21%), Positives = 37/79 (46%)
Frame = +2
Query: 80 NFPNSDLELVAGDVLAKVRSEHNSPIGSRSVXXXXXXXXXXXXXXXTRHESEDEYIDTVD 259
+ PN+ ++ G+++AK ++EH + SR+ + ED+ + T +
Sbjct: 903 SIPNTSMDKHDGEIVAKAQNEHGT-AESRARLTVEQEEEESRSAPTFLKDIEDQTVKTGE 961
Query: 260 VSISETEAPVQQRPAPRLS 316
++ ET V+ P P ++
Sbjct: 962 FAVFET--TVRGNPNPEVT 978
>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 6, isoform
a protein.
Length = 1650
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 218 TRHESEDEYIDTVDVSISETEAPVQQRPAPRLSNGRAHQITSQLTHLKVL 367
+R E +DE + V + + E Q+P R NG++ + Q T + L
Sbjct: 1547 SRREQDDEPTEQVAIVERQHEICFTQKPVLRCQNGKSQESKKQKTSVYCL 1596
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/79 (21%), Positives = 37/79 (46%)
Frame = +2
Query: 80 NFPNSDLELVAGDVLAKVRSEHNSPIGSRSVXXXXXXXXXXXXXXXTRHESEDEYIDTVD 259
+ PN+ ++ G+++AK ++EH + SR+ + ED+ + T +
Sbjct: 903 SIPNTSMDKHDGEIVAKAQNEHGT-AESRARLTVEQEEEESRSAPTFLKDIEDQTVKTGE 961
Query: 260 VSISETEAPVQQRPAPRLS 316
++ ET V+ P P ++
Sbjct: 962 FAVFET--TVRGNPNPEVT 978
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/79 (21%), Positives = 37/79 (46%)
Frame = +2
Query: 80 NFPNSDLELVAGDVLAKVRSEHNSPIGSRSVXXXXXXXXXXXXXXXTRHESEDEYIDTVD 259
+ PN+ ++ G+++AK ++EH + SR+ + ED+ + T +
Sbjct: 903 SIPNTSMDKHDGEIVAKAQNEHGT-AESRARLTVEQEEEESRSAPTFLKDIEDQTVKTGE 961
Query: 260 VSISETEAPVQQRPAPRLS 316
++ ET V+ P P ++
Sbjct: 962 FAVFET--TVRGNPNPEVT 978
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/79 (21%), Positives = 37/79 (46%)
Frame = +2
Query: 80 NFPNSDLELVAGDVLAKVRSEHNSPIGSRSVXXXXXXXXXXXXXXXTRHESEDEYIDTVD 259
+ PN+ ++ G+++AK ++EH + SR+ + ED+ + T +
Sbjct: 903 SIPNTSMDKHDGEIVAKAQNEHGT-AESRARLTVEQEEEESRSAPTFLKDIEDQTVKTGE 961
Query: 260 VSISETEAPVQQRPAPRLS 316
++ ET V+ P P ++
Sbjct: 962 FAVFET--TVRGNPNPEVT 978
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/79 (21%), Positives = 37/79 (46%)
Frame = +2
Query: 80 NFPNSDLELVAGDVLAKVRSEHNSPIGSRSVXXXXXXXXXXXXXXXTRHESEDEYIDTVD 259
+ PN+ ++ G+++AK ++EH + SR+ + ED+ + T +
Sbjct: 903 SIPNTSMDKHDGEIVAKAQNEHGT-AESRARLTVEQEEEESRSAPTFLKDIEDQTVKTGE 961
Query: 260 VSISETEAPVQQRPAPRLS 316
++ ET V+ P P ++
Sbjct: 962 FAVFET--TVRGNPNPEVT 978
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/79 (21%), Positives = 37/79 (46%)
Frame = +2
Query: 80 NFPNSDLELVAGDVLAKVRSEHNSPIGSRSVXXXXXXXXXXXXXXXTRHESEDEYIDTVD 259
+ PN+ ++ G+++AK ++EH + SR+ + ED+ + T +
Sbjct: 903 SIPNTSMDKHDGEIVAKAQNEHGT-AESRARLTVEQEEEESRSAPTFLKDIEDQTVKTGE 961
Query: 260 VSISETEAPVQQRPAPRLS 316
++ ET V+ P P ++
Sbjct: 962 FAVFET--TVRGNPNPEVT 978
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,279,186
Number of Sequences: 27780
Number of extensions: 191570
Number of successful extensions: 562
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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