Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_N01
         (70 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    19   4.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    19   4.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    19   4.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    19   5.5  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 15  PC*TDVKMGERTQNSAE 65
           PC  D K+G RT   +E
Sbjct: 342 PCVMDCKVGVRTYLESE 358


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 15  PC*TDVKMGERTQNSAE 65
           PC  D K+G RT   +E
Sbjct: 257 PCVMDCKVGVRTYLESE 273


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 15  PC*TDVKMGERTQNSAE 65
           PC  D K+G RT   +E
Sbjct: 576 PCVMDCKVGVRTYLESE 592


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic
          acetylcholine receptor alpha9subunit protein.
          Length = 431

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 69 YVLRCFGYVHP 37
          Y+L C  Y HP
Sbjct: 31 YLLNCKNYDHP 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,441
Number of Sequences: 438
Number of extensions: 98
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 4
effective length of database: 144,591
effective search space used:  2602638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)