Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_M23
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 48 5e-06
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 48 5e-06
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 48 5e-06
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 45 4e-05
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 44 7e-05
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 44 1e-04
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 41 6e-04
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 41 6e-04
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 41 6e-04
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 41 6e-04
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 40 0.001
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 40 0.002
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 39 0.003
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 39 0.003
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 39 0.003
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 39 0.003
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 39 0.003
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 39 0.003
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 38 0.004
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 38 0.006
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 38 0.006
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 38 0.006
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 38 0.006
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 38 0.006
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 38 0.006
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 38 0.006
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 38 0.006
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 37 0.010
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 37 0.010
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 37 0.013
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 37 0.013
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 37 0.013
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 37 0.013
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 37 0.013
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 37 0.013
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 36 0.018
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 36 0.018
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 36 0.018
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 36 0.018
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 36 0.018
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 36 0.024
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 36 0.024
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 36 0.024
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 35 0.041
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 35 0.041
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 35 0.041
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 33 0.17
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 33 0.17
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 33 0.17
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 33 0.17
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 33 0.17
AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical... 33 0.17
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 33 0.22
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 33 0.22
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 32 0.29
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 32 0.29
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 32 0.38
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 31 0.51
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 31 0.51
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 31 0.51
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 31 0.51
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 31 0.51
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 31 0.88
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 31 0.88
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 31 0.88
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 30 1.5
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 30 1.5
Z81486-8|CAB03990.2| 338|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 29 2.0
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 29 2.0
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 29 2.0
U80031-6|AAB37618.2| 491|Caenorhabditis elegans Hypothetical pr... 28 4.7
AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical ... 28 4.7
Z70781-3|CAA94833.2| 352|Caenorhabditis elegans Hypothetical pr... 28 6.2
U00065-3|AAK68286.3| 981|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 27 8.2
AY519853-1|AAR89634.1| 545|Caenorhabditis elegans acetylcholine... 27 8.2
AF067943-10|AAC17666.3| 545|Caenorhabditis elegans Acetylcholin... 27 8.2
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 48.0 bits (109), Expect = 5e-06
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIV-----TTKL---FGFVQFRNETSAQQAISK 348
+I+VGGLT T D + E + ++G I I+ TTK FGFV F +T A+ K
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM-K 82
Query: 349 ANGSIFQGKNINVKTARTTDDRREQQQPISNNEEIVN 459
I GK ++ K A DD+ + +S V+
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVS 119
Score = 36.7 bits (81), Expect = 0.013
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Frame = +1
Query: 169 KDRSTAHL---RIYVGGLTEKATVDDLYEHFIEYGPI--DGIVTTKL------FGFVQFR 315
K+RS +++ R+YV G+ E T D L E+F +YG + I+ K FGFV F
Sbjct: 104 KNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFD 163
Query: 316 NETSAQQAISKANGSIFQGKNINVKTARTTDDRREQQ 426
+ S Q + + + + G +V+ + D+ + Q
Sbjct: 164 DHDSVDQCVLQKSHMV-NGHRCDVRKGLSKDEMSKAQ 199
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 48.0 bits (109), Expect = 5e-06
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIV-----TTKL---FGFVQFRNETSAQQAISK 348
+I+VGGLT T D + E + ++G I I+ TTK FGFV F +T A+ K
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM-K 82
Query: 349 ANGSIFQGKNINVKTARTTDDRREQQQPISNNEEIVN 459
I GK ++ K A DD+ + +S V+
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVS 119
Score = 36.7 bits (81), Expect = 0.013
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Frame = +1
Query: 169 KDRSTAHL---RIYVGGLTEKATVDDLYEHFIEYGPI--DGIVTTKL------FGFVQFR 315
K+RS +++ R+YV G+ E T D L E+F +YG + I+ K FGFV F
Sbjct: 104 KNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFD 163
Query: 316 NETSAQQAISKANGSIFQGKNINVKTARTTDDRREQQ 426
+ S Q + + + + G +V+ + D+ + Q
Sbjct: 164 DHDSVDQCVLQKSHMV-NGHRCDVRKGLSKDEMSKAQ 199
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 48.0 bits (109), Expect = 5e-06
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIV-----TTKL---FGFVQFRNETSAQQAISK 348
+I+VGGLT T D + E + ++G I I+ TTK FGFV F +T A+ K
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM-K 82
Query: 349 ANGSIFQGKNINVKTARTTDDRREQQQPISNNEEIVN 459
I GK ++ K A DD+ + +S V+
Sbjct: 83 QRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVS 119
Score = 36.7 bits (81), Expect = 0.013
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Frame = +1
Query: 169 KDRSTAHL---RIYVGGLTEKATVDDLYEHFIEYGPI--DGIVTTKL------FGFVQFR 315
K+RS +++ R+YV G+ E T D L E+F +YG + I+ K FGFV F
Sbjct: 104 KNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFD 163
Query: 316 NETSAQQAISKANGSIFQGKNINVKTARTTDDRREQQ 426
+ S Q + + + + G +V+ + D+ + Q
Sbjct: 164 DHDSVDQCVLQKSHMV-NGHRCDVRKGLSKDEMSKAQ 199
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIVTTKLFGFVQFRNETSAQQAISKANGSIFQG 372
RIY+G LT + + D+ F YG I ++ FGFV+F ++ A+ A+ NG G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
Query: 373 KNI 381
+ +
Sbjct: 64 ERV 66
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIVTTKLFGFVQFRNETSAQQAISKANGSIFQG 372
RIY+G LT + + D+ F YG I ++ FGFV+F ++ A+ A+ NG G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
Query: 373 KNI 381
+ +
Sbjct: 64 ERV 66
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIVTTKLFGFVQFRNETSAQQAISKANGSIFQG 372
RIY+G LT + + D+ F YG I ++ FGFV+F ++ A+ A+ NG G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
Query: 373 KNI 381
+ +
Sbjct: 64 ERV 66
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = +1
Query: 190 LRIYVGGLTEKATVDDLYEHFIEYGPIDGIVTTKLFGFVQFRNETSAQQAISKANGSIFQ 369
+R+Y+G L +A+ D+ F YG + ++ FGFV F+++ A A+ NG
Sbjct: 2 VRVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELC 61
Query: 370 GKNINVKTAR 399
G+ + ++ R
Sbjct: 62 GERVILEFPR 71
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +1
Query: 139 DKLTLDRHAMKDRSTAHLRIYVGGLTEKATVDDLYEHFIEYGPID--GIVTTKLFGFVQF 312
DKLT ++ + +YVG ++++ T DL + F YG I I T+ + FV++
Sbjct: 221 DKLTFEQ-VFNSTKADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRY 279
Query: 313 RNETSAQQAISKANGSIFQGKNINVKTART 402
+ A +AI + NG G + RT
Sbjct: 280 EKKECATKAIMEMNGKEMAGNQVRCSWGRT 309
Score = 33.9 bits (74), Expect = 0.095
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Frame = +1
Query: 166 MKDRSTAHLRIYVGGLTEKATVDDLYEHFIEYGPID------GIVTTKL--FGFVQFRNE 321
M+ ++ H ++VG L++ + + L F ++G + + T K +GFV F N+
Sbjct: 127 MRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNK 186
Query: 322 TSAQQAISKANGSIFQGKNINVKTARTTDDRREQQQPISNNEEIVNQS 465
+A+ AI+ NG + GK V+T E+ + E++ N +
Sbjct: 187 QNAENAIAGMNGK-WIGKRA-VRTNWAARKNSEENRDKLTFEQVFNST 232
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 43.6 bits (98), Expect = 1e-04
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Frame = +1
Query: 196 IYVGGLTEKATVDDLYEHFIEYGPIDGIVTT--------KLFGFVQFRNETSAQQAISKA 351
+YVGG TE T L FI +G + I + FGFV+F A AI
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNM 72
Query: 352 NGSIFQGKNINVKTARTTDDRREQQQPISNNEE 450
N S GK I V AR Q+P+ ++E
Sbjct: 73 NESELFGKTIRVNFARPPKATERSQKPVWADDE 105
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 41.1 bits (92), Expect = 6e-04
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Frame = +1
Query: 196 IYVGGLTEKATVDDLYEHFIEYGPIDGIVTT--------KLFGFVQFRNETSAQQAISKA 351
+YVG + T DDL +F + G + + + F FV+F E +AQ+A+ +
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 352 NGSIFQGKNINVKTARTTDD 411
NG F G+ + V A+ ++
Sbjct: 66 NGVDFNGRALRVNLAQNRNN 85
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 41.1 bits (92), Expect = 6e-04
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Frame = +1
Query: 196 IYVGGLTEKATVDDLYEHFIEYGPIDGIVTT--------KLFGFVQFRNETSAQQAISKA 351
+YVG + + T +++ +F G ++ + + F FV+F E AQ+A+ +
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 352 NGSIFQGKNINVKTA 396
NG F G+N+ V A
Sbjct: 68 NGVAFNGRNLRVNYA 82
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 41.1 bits (92), Expect = 6e-04
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Frame = +1
Query: 196 IYVGGLTEKATVDDLYEHFIEYGPIDGI------VTT--KLFGFVQFRNETSAQQAISKA 351
IYVGGL EK + L+E ++ GP+ + VT + FGFV+F E A AI
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 352 NGSIFQGKNINVKTA 396
N GK I V A
Sbjct: 75 NMIKLYGKPIKVNKA 89
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Frame = +1
Query: 196 IYVGGLTEKATVDDLYEHFIEYGPIDGIV---------TTKLFGFVQFRNETSAQQAISK 348
I+VG L + LY+ F +G I + T+K F F+ F + ++ A+
Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161
Query: 349 ANGSIFQGKNINVKTARTTDDRREQ 423
NG + I V A D + E+
Sbjct: 162 MNGQFLCNRAITVSYAFKRDSKGER 186
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 41.1 bits (92), Expect = 6e-04
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Frame = +1
Query: 196 IYVGGLTEKATVDDLYEHFIEYGPIDGI------VTT--KLFGFVQFRNETSAQQAISKA 351
IYVGGL EK + L+E ++ GP+ + VT + FGFV+F E A AI
Sbjct: 25 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 84
Query: 352 NGSIFQGKNINVKTA 396
N GK I V A
Sbjct: 85 NMIKLYGKPIKVNKA 99
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Frame = +1
Query: 196 IYVGGLTEKATVDDLYEHFIEYGPIDGIV---------TTKLFGFVQFRNETSAQQAISK 348
I+VG L + LY+ F +G I + T+K F F+ F + ++ A+
Sbjct: 112 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 171
Query: 349 ANGSIFQGKNINVKTARTTDDRREQ 423
NG + I V A D + E+
Sbjct: 172 MNGQFLCNRAITVSYAFKRDSKGER 196
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/76 (22%), Positives = 36/76 (47%)
Frame = +1
Query: 196 IYVGGLTEKATVDDLYEHFIEYGPIDGIVTTKLFGFVQFRNETSAQQAISKANGSIFQGK 375
+Y+ + E T + L E F EY +D + K + F+ F +A+ + NG +G
Sbjct: 379 LYIRNIKEAVTEEKLNELFKEYASLDRVKKVKDYAFIHFNERDDCLKAMEEWNGKELEGT 438
Query: 376 NINVKTARTTDDRREQ 423
+ A+ +++++
Sbjct: 439 VVEASLAKPPQEKKKK 454
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Frame = +1
Query: 190 LRIYVGGLTEKATVDDLYEHFIEYGPI-------DGIVTTKLFGFVQFRNETSAQQAISK 348
+ +YV + E D L +HF +G I D +K FGFV F A A++
Sbjct: 343 VNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTD 402
Query: 349 ANGSIFQGKNINVKTARTTDDRREQ 423
N + K + V A+ +DRR Q
Sbjct: 403 MNSKMIGAKPLYVALAQRKEDRRAQ 427
Score = 36.3 bits (80), Expect = 0.018
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Frame = +1
Query: 187 HLRIYVGGLTEKATVDDLYEHFIEYGPI-DGIVTT------KLFGFVQFRNETSAQQAIS 345
+ ++V E + L F ++G I +V T K FGFV F ++ +A QA+
Sbjct: 237 YTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVE 296
Query: 346 KANGSIFQGKNINVKTARTTDDRREQQQPISNNEEIVNQ 462
K N SI +G + + R + E+ + E + Q
Sbjct: 297 KLNDSILEGTDCKLSVCR-AQKKSERSAELKRKYEALKQ 334
Score = 35.1 bits (77), Expect = 0.041
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 286 TKLFGFVQFRNETSAQQAISKANGSIFQGKNINV 387
+K +GFV F E SAQ AI K NG + K + V
Sbjct: 184 SKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Frame = +1
Query: 190 LRIYVGGLTEKATVDDLYEHFIEYGPI-------DGIVTTKLFGFVQFRNETSAQQAISK 348
+ +YV + E D L +HF +G I D +K FGFV F A A++
Sbjct: 343 VNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTD 402
Query: 349 ANGSIFQGKNINVKTARTTDDRREQ 423
N + K + V A+ +DRR Q
Sbjct: 403 MNSKMIGAKPLYVALAQRKEDRRAQ 427
Score = 36.3 bits (80), Expect = 0.018
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Frame = +1
Query: 187 HLRIYVGGLTEKATVDDLYEHFIEYGPI-DGIVTT------KLFGFVQFRNETSAQQAIS 345
+ ++V E + L F ++G I +V T K FGFV F ++ +A QA+
Sbjct: 237 YTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVE 296
Query: 346 KANGSIFQGKNINVKTARTTDDRREQQQPISNNEEIVNQ 462
K N SI +G + + R + E+ + E + Q
Sbjct: 297 KLNDSILEGTDCKLSVCR-AQKKSERSAELKRKYEALKQ 334
Score = 35.1 bits (77), Expect = 0.041
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 286 TKLFGFVQFRNETSAQQAISKANGSIFQGKNINV 387
+K +GFV F E SAQ AI K NG + K + V
Sbjct: 184 SKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Frame = +1
Query: 175 RSTAHLRIYVGGLTEKATVDDLYEHFIEYGPIDGIVTT--------KLFGFVQFRNETSA 330
RS ++V + E+AT DD+++ F EYG I I K + V++ + A
Sbjct: 50 RSVEGWIVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEA 109
Query: 331 QQAISKANGSIFQGKNINV 387
+AI ++N + G+N+ V
Sbjct: 110 NEAIDQSNDTDLLGQNVKV 128
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Frame = +1
Query: 148 TLDRHAMKDRSTAHLRIYVGGLTEKATVDDLYEHFIEYGPIDGIVT--------TKLFGF 303
T+ + + +I+VGG++ + +DL HF +YG + ++ F F
Sbjct: 15 TIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAF 74
Query: 304 VQFRNETSAQQAISKANGSIFQGKNINVKTARTTDDRR 417
V+F + A++ A +GK++ VK A++ ++++
Sbjct: 75 VEFTTGEGCKLALA-AREQTIKGKSVEVKPAKSRENKK 111
Score = 37.1 bits (82), Expect = 0.010
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Frame = +1
Query: 175 RSTAHLRIYVGGLTEKATVDDLYEHFIEYGPIDGI-----VTTKL---FGFVQFRNETSA 330
+S + +++VGGL + DL HF ++G +D I TK F F+ F E SA
Sbjct: 105 KSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESA 164
Query: 331 QQAISKANGSIFQGKNINVKTA 396
+A S+ F + +VK A
Sbjct: 165 DKASSQTK-QTFGTRECDVKKA 185
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Frame = +1
Query: 148 TLDRHAMKDRSTAHLRIYVGGLTEKATVDDLYEHFIEYGPIDGIVT--------TKLFGF 303
T+ + + +I+VGG++ + +DL HF +YG + ++ F F
Sbjct: 15 TIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAF 74
Query: 304 VQFRNETSAQQAISKANGSIFQGKNINVKTARTTDDRR 417
V+F + A++ A +GK++ VK A++ ++++
Sbjct: 75 VEFTTGEGCKLALA-AREQTIKGKSVEVKPAKSRENKK 111
Score = 37.1 bits (82), Expect = 0.010
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Frame = +1
Query: 175 RSTAHLRIYVGGLTEKATVDDLYEHFIEYGPIDGI-----VTTKL---FGFVQFRNETSA 330
+S + +++VGGL + DL HF ++G +D I TK F F+ F E SA
Sbjct: 105 KSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESA 164
Query: 331 QQAISKANGSIFQGKNINVKTA 396
+A S+ F + +VK A
Sbjct: 165 DKASSQTK-QTFGTRECDVKKA 185
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 38.7 bits (86), Expect = 0.003
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Frame = +1
Query: 190 LRIYVGGLTEKATVDDLYEHFIEYGPIDG--IVT-----TKLFGFVQFRNETSAQQAISK 348
+ +YV L E D L + F YG I ++T +K FGFV F A A+++
Sbjct: 257 VNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTE 316
Query: 349 ANGSIFQGKNINVKTARTTDDRREQ 423
N + K + V A+ +DRR Q
Sbjct: 317 MNSKMVCSKPLYVAIAQRKEDRRAQ 341
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 38.7 bits (86), Expect = 0.003
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Frame = +1
Query: 190 LRIYVGGLTEKATVDDLYEHFIEYGPIDG--IVT-----TKLFGFVQFRNETSAQQAISK 348
+ +YV L E D L + F YG I ++T +K FGFV F A A+++
Sbjct: 254 VNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTE 313
Query: 349 ANGSIFQGKNINVKTARTTDDRREQ 423
N + K + V A+ +DRR Q
Sbjct: 314 MNSKMVCSKPLYVAIAQRKEDRRAQ 338
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 286 TKLFGFVQFRNETSAQQAISKANGSIFQGKNINV 387
+K +GFV F E +AQ AI K NG + GK + V
Sbjct: 96 SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 129
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 38.7 bits (86), Expect = 0.003
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Frame = +1
Query: 190 LRIYVGGLTEKATVDDLYEHFIEYGPIDG--IVT-----TKLFGFVQFRNETSAQQAISK 348
+ +YV L E D L + F YG I ++T +K FGFV F A A+++
Sbjct: 317 VNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTE 376
Query: 349 ANGSIFQGKNINVKTARTTDDRREQ 423
N + K + V A+ +DRR Q
Sbjct: 377 MNSKMVCSKPLYVAIAQRKEDRRAQ 401
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 286 TKLFGFVQFRNETSAQQAISKANGSIFQGKNINV 387
+K +GFV F E +AQ AI K NG + GK + V
Sbjct: 159 SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Frame = +1
Query: 175 RSTAHLRIYVGGLTEKATVDDLYEHFIEYGPIDGIVT--------TKLFGFVQFRNETSA 330
R T +I+VGGL + L+E+F ++G I+ V ++ +GFV ++ SA
Sbjct: 30 RDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASA 89
Query: 331 QQAISKANGSIFQGKNINVKTA 396
++A N I G+ NV A
Sbjct: 90 ERACKDPN-PIIDGRKANVNLA 110
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Frame = +1
Query: 196 IYVGGLTEKATVDDLYEHFIEYGPIDGIVTT--------KLFGFVQFRNETSAQQAISKA 351
+YVG + T ++L F G I+ + + F F++F E SAQ+A+ +
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 352 NGSIFQGKNINVKTA 396
NG+ F G+ + V A
Sbjct: 67 NGAEFNGRPLRVNLA 81
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 37.9 bits (84), Expect = 0.006
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Frame = +1
Query: 178 STAHLRIYVGGLTEKATVDDLYEHFIEYGPI-DGIV-----TTKL--FGFVQFRNETSAQ 333
+T H ++VG L+ + L E F +G + D V TTK +GFV + A+
Sbjct: 18 TTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAE 77
Query: 334 QAISKANGSIFQGKNINVKTARTTDDRREQQQPISNNE----EIVNQS 465
+AI + NG + G+ ++T T +Q++P NE EI NQ+
Sbjct: 78 RAIEQMNGQ-WLGRR-TIRTNWATRKPGDQEKPSHYNEKSYDEIYNQT 123
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 37.9 bits (84), Expect = 0.006
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Frame = +1
Query: 178 STAHLRIYVGGLTEKATVDDLYEHFIEYGPI-DGIV-----TTKL--FGFVQFRNETSAQ 333
+T H ++VG L+ + L E F +G + D V TTK +GFV + A+
Sbjct: 28 TTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAE 87
Query: 334 QAISKANGSIFQGKNINVKTARTTDDRREQQQPISNNE----EIVNQS 465
+AI + NG + G+ ++T T +Q++P NE EI NQ+
Sbjct: 88 RAIEQMNGQ-WLGRR-TIRTNWATRKPGDQEKPSHYNEKSYDEIYNQT 133
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 37.9 bits (84), Expect = 0.006
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Frame = +1
Query: 178 STAHLRIYVGGLTEKATVDDLYEHFIEYGPI-DGIV-----TTKL--FGFVQFRNETSAQ 333
+T H ++VG L+ + L E F +G + D V TTK +GFV + A+
Sbjct: 131 TTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAE 190
Query: 334 QAISKANGSIFQGKNINVKTARTTDDRREQQQPISNNE----EIVNQS 465
+AI + NG + G+ ++T T +Q++P NE EI NQ+
Sbjct: 191 RAIEQMNGQ-WLGRR-TIRTNWATRKPGDQEKPSHYNEKSYDEIYNQT 236
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 37.9 bits (84), Expect = 0.006
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Frame = +1
Query: 178 STAHLRIYVGGLTEKATVDDLYEHFIEYGPI-DGIV-----TTKL--FGFVQFRNETSAQ 333
+T H ++VG L+ + L E F +G + D V TTK +GFV + A+
Sbjct: 99 TTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAE 158
Query: 334 QAISKANGSIFQGKNINVKTARTTDDRREQQQPISNNE----EIVNQS 465
+AI + NG + G+ ++T T +Q++P NE EI NQ+
Sbjct: 159 RAIEQMNGQ-WLGRR-TIRTNWATRKPGDQEKPSHYNEKSYDEIYNQT 204
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 37.9 bits (84), Expect = 0.006
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Frame = +1
Query: 130 IMADKLTLDRHAMKDRSTAHLRIYVGGLTEKATVDDLYEHFIEYGPIDGIVT-------- 285
+ A K + A + T +YVG + K+TV ++ EHF G + +
Sbjct: 26 LSASKKYMAPTAEEQEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGY 85
Query: 286 TKLFGFVQFRNETSAQQAISKANGSIFQGKNINVKTART 402
K F FV+F+ S Q A+ +G++F+ + I V RT
Sbjct: 86 QKNFAFVEFQKLESVQLAL-VLSGTMFRNRKIMVTLKRT 123
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIVTT--------KLFGFVQFRNETSAQQAISK 348
RIYVG ++ + D L F +GPI I + K F FV++ +A A
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 349 ANGSIFQGKNINVKTARTTDDRREQQQP 432
NG + G+N+ V + + R Q P
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMP 190
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIVTT--------KLFGFVQFRNETSAQQAISK 348
RIYVG ++ + D L F +GPI I + K F FV++ +A A
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 349 ANGSIFQGKNINVKTARTTDDRREQQQP 432
NG + G+N+ V + + R Q P
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMP 190
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Frame = +1
Query: 187 HLRIYVGGLTEKATVDDLYEHFIEYGPIDGIVTTKL--------FGFVQFRNETSAQQAI 342
+ R+YV + + DL F +G I + FG+++F N TS +AI
Sbjct: 206 YFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAI 265
Query: 343 SKANGSIFQGKNINVKTARTTDDRREQQQPIS 438
+ N G+ + V T D QP S
Sbjct: 266 AGMNMFDLGGQYLRVGKCVTPPDALTYLQPAS 297
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIVTT--------KLFGFVQFRNETSAQQAISK 348
RIYVG ++ + D L F +GPI I + K F FV++ +A A
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 349 ANGSIFQGKNINVKTARTTDDRREQQQP 432
NG + G+N+ V + + R Q P
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMP 190
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Frame = +1
Query: 187 HLRIYVGGLTEKATVDDLYEHFIEYGPIDGIVTTKL--------FGFVQFRNETSAQQAI 342
+ R+YV + + DL F +G I + FG+++F N TS +AI
Sbjct: 206 YFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAI 265
Query: 343 SKANGSIFQGKNINVKTARTTDDRREQQQPIS 438
+ N G+ + V T D QP S
Sbjct: 266 AGMNMFDLGGQYLRVGKCVTPPDALTYLQPAS 297
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 37.1 bits (82), Expect = 0.010
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Frame = +1
Query: 190 LRIYVGGLTEKATVDDLYEHFIEYGPIDG--IVT-----TKLFGFVQFRNETSAQQAISK 348
+ +YV L E D L + F YG I ++T +K FGFV F A A+++
Sbjct: 317 VNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTE 376
Query: 349 ANGSIFQGKNINVKTARTTDDRREQ 423
N + K + V + +DRR Q
Sbjct: 377 MNSKMVCSKPLYVAIGQRKEDRRAQ 401
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 286 TKLFGFVQFRNETSAQQAISKANGSIFQGKNINV 387
+K +GFV F E +AQ AI K NG + GK + V
Sbjct: 159 SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIVTTK----LFGFVQFRNETSAQQAISKANGS 360
++YVG L ++ + F +YG I + F FV+F + A+ A+ +G
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 361 IFQGKNINVKTARTTDDRREQQQPISN 441
F G+ I V+ R R +P+ +
Sbjct: 70 EFDGRRIRVEFTRGVGPRGPSGRPLQD 96
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 36.7 bits (81), Expect = 0.013
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGP-------IDGIVTTKLFGFVQFRNETSAQQAISKA 351
+I++GGL T D + E +GP +D +K + F ++ + T QAI+
Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 352 NGSIFQGKNINVKTARTTDDRREQQQPIS 438
NG K + V+ A R P S
Sbjct: 352 NGMQLGDKQLVVQLACANQQRHNTNLPNS 380
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 36.7 bits (81), Expect = 0.013
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Frame = +1
Query: 169 KDRSTAHL---RIYVGGLTEKATVDDLYEHFIEYGPI--DGIVTTKL------FGFVQFR 315
K+RS +++ R+YV G+ E T D L E+F +YG + I+ K FGFV F
Sbjct: 66 KNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFD 125
Query: 316 NETSAQQAISKANGSIFQGKNINVKTARTTDDRREQQ 426
+ S Q + + + + G +V+ + D+ + Q
Sbjct: 126 DHDSVDQCVLQKSHMV-NGHRCDVRKGLSKDEMSKAQ 161
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 36.7 bits (81), Expect = 0.013
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Frame = +1
Query: 169 KDRSTAHL---RIYVGGLTEKATVDDLYEHFIEYGPI--DGIVTTKL------FGFVQFR 315
K+RS +++ R+YV G+ E T D L E+F +YG + I+ K FGFV F
Sbjct: 66 KNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFD 125
Query: 316 NETSAQQAISKANGSIFQGKNINVKTARTTDDRREQQ 426
+ S Q + + + + G +V+ + D+ + Q
Sbjct: 126 DHDSVDQCVLQKSHMV-NGHRCDVRKGLSKDEMSKAQ 161
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 36.7 bits (81), Expect = 0.013
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGP-------IDGIVTTKLFGFVQFRNETSAQQAISKA 351
+I++GGL T D + E +GP +D +K + F ++ + T QAI+
Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 352 NGSIFQGKNINVKTARTTDDRREQQQPIS 438
NG K + V+ A R P S
Sbjct: 352 NGMQLGDKQLVVQLACANQQRHNTNLPNS 380
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 36.7 bits (81), Expect = 0.013
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGP-------IDGIVTTKLFGFVQFRNETSAQQAISKA 351
+I++GGL T D + E +GP +D +K + F ++ + T QAI+
Sbjct: 267 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 326
Query: 352 NGSIFQGKNINVKTARTTDDRREQQQPIS 438
NG K + V+ A R P S
Sbjct: 327 NGMQLGDKQLVVQLACANQQRHNTNLPNS 355
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 36.7 bits (81), Expect = 0.013
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGP-------IDGIVTTKLFGFVQFRNETSAQQAISKA 351
+I++GGL T D + E +GP +D +K + F ++ + T QAI+
Sbjct: 270 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 329
Query: 352 NGSIFQGKNINVKTARTTDDRREQQQPIS 438
NG K + V+ A R P S
Sbjct: 330 NGMQLGDKQLVVQLACANQQRHNTNLPNS 358
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 36.3 bits (80), Expect = 0.018
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPID--GIVTTKL-----FGFVQFRNETSAQQAISKA 351
R+ V L T L + F +YG I + TK F FV F +E SA A++K+
Sbjct: 4 RLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAKS 63
Query: 352 NGSIFQGKNINVKTARTTDD 411
N + F K + V+ R D
Sbjct: 64 NQTFFNSKKLTVEECRPFGD 83
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 295 FGFVQFRNETSAQQAISKANGSIFQGKNINVK 390
FGFVQF A+ A+ G + G ++ +K
Sbjct: 691 FGFVQFYTAFDAKTALKDMQGELLDGHSLELK 722
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 36.3 bits (80), Expect = 0.018
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIVTTKL---FGFVQFRNETSAQQAISKANGSI 363
++YVGGL AT +L E F +G I + + F FV++ + A+ A+ +GS
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 364 FQGKNINVKTARTTDDRR 417
G + + +T RR
Sbjct: 64 ICG--VRARVELSTGQRR 79
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 36.3 bits (80), Expect = 0.018
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIVTTKL---FGFVQFRNETSAQQAISKANGSI 363
++YVGGL AT +L E F +G I + + F FV++ + A+ A+ +GS
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 364 FQGKNINVKTARTTDDRR 417
G + + +T RR
Sbjct: 64 ICG--VRARVELSTGQRR 79
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 36.3 bits (80), Expect = 0.018
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIVTTKL---FGFVQFRNETSAQQAISKANGSI 363
++YVGGL AT +L E F +G I + + F FV++ + A+ A+ +GS
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 364 FQGKNINVKTARTTDDRR 417
G + + +T RR
Sbjct: 64 ICG--VRARVELSTGQRR 79
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 36.3 bits (80), Expect = 0.018
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIVTTK----LFGFVQFRNETSAQQAISKANGS 360
++YVG L ++ + F +YG I + F FV+F + A+ A+ +G
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 361 IFQGKNINVKTARTTDDRREQQQPISN 441
F G+ I V+ R R +P+ +
Sbjct: 70 EFDGRRIRVEFTRGVGPRGPGGRPLQD 96
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 35.9 bits (79), Expect = 0.024
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = +1
Query: 154 DRHAMKDRSTAHLRIYVGGLTEKATVDDLYEHFIEYGPIDGIVT------TKLFGFVQFR 315
DR + R++V + K DL F + GP+ + +K FGFV +
Sbjct: 88 DRSTSSSSTDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQ 147
Query: 316 NETSAQQAISKANGSIFQGKNINVKTA 396
N A +A ++ NG+ +G+ + V A
Sbjct: 148 NPDDADRARAEFNGTTIEGRRVEVNLA 174
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 35.9 bits (79), Expect = 0.024
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = +1
Query: 154 DRHAMKDRSTAHLRIYVGGLTEKATVDDLYEHFIEYGPIDGIVT------TKLFGFVQFR 315
DR + R++V + K DL F + GP+ + +K FGFV +
Sbjct: 88 DRSTSSSSTDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQ 147
Query: 316 NETSAQQAISKANGSIFQGKNINVKTA 396
N A +A ++ NG+ +G+ + V A
Sbjct: 148 NPDDADRARAEFNGTTIEGRRVEVNLA 174
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 35.9 bits (79), Expect = 0.024
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +1
Query: 169 KDRSTAHLRIYVGGLTEKA-TVDDLYEHFIEYGPIDGI--VTTKLFGFVQFRNETSAQQA 339
KD R+++G + T DD+ E F +G I + + FGFVQF SA ++
Sbjct: 76 KDPHMIRARVFIGNIARAIITRDDIIELFRPFGKIIAVNYFAQQGFGFVQFNEAGSADES 135
Query: 340 ISKANGSIFQGKNINVKTA 396
NG ++ ++V A
Sbjct: 136 CRSLNGMSWKACCLDVHLA 154
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 35.1 bits (77), Expect = 0.041
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGP-IDGIVT-------TKLFGFVQFRNETSAQQAISK 348
++++GGL+ T + L +F ++GP +D IV ++ FGFV F + SA+ A++
Sbjct: 50 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMND 109
Query: 349 ANGSIFQGKNINVKTA 396
+ GK ++ K A
Sbjct: 110 RPHKL-GGKTVDSKRA 124
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 35.1 bits (77), Expect = 0.041
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGP-IDGIVT-------TKLFGFVQFRNETSAQQAISK 348
++++GGL+ T + L +F ++GP +D IV ++ FGFV F + SA+ A++
Sbjct: 70 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMND 129
Query: 349 ANGSIFQGKNINVKTA 396
+ GK ++ K A
Sbjct: 130 RPHKL-GGKTVDSKRA 144
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 35.1 bits (77), Expect = 0.041
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGP-IDGIVT-------TKLFGFVQFRNETSAQQAISK 348
++++GGL+ T + L +F ++GP +D IV ++ FGFV F + SA+ A++
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMND 130
Query: 349 ANGSIFQGKNINVKTA 396
+ GK ++ K A
Sbjct: 131 RPHKL-GGKTVDSKRA 145
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIVTTKLFGFVQFRNETSAQQAISKANGSIFQG 372
R+Y+G + A D+ YG I+ I F FV F + A+ A +G +G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEG 62
Query: 373 KNINV 387
++ +
Sbjct: 63 SSMRL 67
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIVTTKLFGFVQFRNETSAQQAISKANGSIFQG 372
R+Y+G + A D+ YG I+ I F FV F + A+ A +G +G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEG 62
Query: 373 KNINV 387
++ +
Sbjct: 63 SSMRL 67
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIVTTKLFGFVQFRNETSAQQAISKANGSIFQG 372
R+Y+G + A D+ YG I+ I F FV F + A+ A +G +G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEG 62
Query: 373 KNINV 387
++ +
Sbjct: 63 SSMRL 67
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Frame = +1
Query: 196 IYVGGLTEKATVDDLYEHFIEYG-------PIDGIV-TTKLFGFVQFRNETSAQQAISKA 351
+++G + +T++++ EHF G P D K F +++F + +S + A+
Sbjct: 57 VFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENAL-VM 115
Query: 352 NGSIFQGKNINVKTART 402
NGS+F+ + I V RT
Sbjct: 116 NGSLFRSRPIVVTAKRT 132
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 33.1 bits (72), Expect = 0.17
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Frame = +1
Query: 169 KDRSTAHLRIYVGGLTEKATVDDLYEHFIEYGPIDG--IVTT------KLFGFVQFRNET 324
K ++ H ++VG L + L E F+++G + I+ K +GFV +
Sbjct: 125 KPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRRE 184
Query: 325 SAQQAISKANGSIFQGKNINVKTARTTDD 411
A++AI + NG+ + I A D
Sbjct: 185 DAERAIDEMNGAWLGRRTIRTNWATRKPD 213
>AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical
protein Y37D8A.21 protein.
Length = 282
Score = 33.1 bits (72), Expect = 0.17
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Frame = +1
Query: 196 IYVGGLTEKATVDDLYEHFIEYGPIDGIV------TTKLFGFVQFRNETSAQQAISKANG 357
IYV +E+ + L E FI+ GP+ ++ + F V+F +E S AI NG
Sbjct: 15 IYVANFSEEVDEELLEELFIQAGPVVKVILRDVRDSNAKFALVEFEDELSVLFAIELMNG 74
Query: 358 SIFQGKNINVKTARTTDDRREQQQPISNNEEIV 456
+ + VK T+ ++ EE V
Sbjct: 75 VRLFNQELQVKPRNGTNQEELYKRKKGEIEERV 107
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Frame = +1
Query: 196 IYVGGLTEKATVDDLYEHFIEYGPIDGIVT--------TKLFGFVQFRNETSAQQAISKA 351
+YVG + AT +++ +HF G + + K F +V+F + Q A++
Sbjct: 80 VYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMT 139
Query: 352 NGSIFQGKNINVKTART 402
+ S+ +G+ I V RT
Sbjct: 140 D-SLLRGRQIKVDPKRT 155
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Frame = +1
Query: 196 IYVGGLTEKATVDDLYEHFIEYG-------PIDGIV-TTKLFGFVQFRNETSAQQAISKA 351
+++G + +T++++ EHF G P D K F +++F + +S + A+
Sbjct: 63 VFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENAL-VM 121
Query: 352 NGSIFQGKNINVKTART 402
NGS+F+ + I V RT
Sbjct: 122 NGSLFRSRPIVVTAKRT 138
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 32.3 bits (70), Expect = 0.29
Identities = 20/94 (21%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Frame = +1
Query: 142 KLTLDRHAMKDRSTAHLRIYVGGLTEKATVDDLYEHFIEYGPIDGIVTT--------KLF 297
K+ + T ++++GGL+ +T++D+ ++F YG ++ + + F
Sbjct: 118 KVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGF 177
Query: 298 GFVQFRNETSAQQAISKANGSIFQGKNINVKTAR 399
GFV F ++ A + + + + GK + K A+
Sbjct: 178 GFVTFDSDEVADK-VCEIHFHEINGKMVECKKAQ 210
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 32.3 bits (70), Expect = 0.29
Identities = 20/94 (21%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Frame = +1
Query: 142 KLTLDRHAMKDRSTAHLRIYVGGLTEKATVDDLYEHFIEYGPIDGIVTT--------KLF 297
K+ + T ++++GGL+ +T++D+ ++F YG ++ + + F
Sbjct: 118 KVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGF 177
Query: 298 GFVQFRNETSAQQAISKANGSIFQGKNINVKTAR 399
GFV F ++ A + + + + GK + K A+
Sbjct: 178 GFVTFDSDEVADK-VCEIHFHEINGKMVECKKAQ 210
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 31.9 bits (69), Expect = 0.38
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Frame = +1
Query: 196 IYVGGLTEKATVDDLYEHFIEYGPI-------DGIV-TTKLFGFVQFRNETSAQQAISKA 351
+YV G+ + T+ +L F +G I D + +K GFV+F + A AI
Sbjct: 130 LYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTL 189
Query: 352 NGSIFQG--KNINVKTA 396
NGSI G + I VK A
Sbjct: 190 NGSIPSGCSEQITVKFA 206
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 286 TKLFGFVQFRNETSAQQAISKANGSIFQGKNINVK 390
+K FGFV + N SA AIS NG K + V+
Sbjct: 375 SKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQ 409
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 286 TKLFGFVQFRNETSAQQAISKANGSIFQGKNINVK 390
+K FGFV + N SA AIS NG K + V+
Sbjct: 539 SKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQ 573
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 286 TKLFGFVQFRNETSAQQAISKANGSIFQGKNINVK 390
+K FGFV + N SA AIS NG K + V+
Sbjct: 539 SKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQ 573
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 286 TKLFGFVQFRNETSAQQAISKANGSIFQGKNINVK 390
+K FGFV + N SA AIS NG K + V+
Sbjct: 468 SKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQ 502
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 286 TKLFGFVQFRNETSAQQAISKANGSIFQGKNINVK 390
+K FGFV + N SA AIS NG K + V+
Sbjct: 539 SKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQ 573
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 286 TKLFGFVQFRNETSAQQAISKANGSIFQGKNINVKTA 396
+K FGFV +N A +A ++ NG+ +G+ + V A
Sbjct: 20 SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 30.7 bits (66), Expect = 0.88
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDG--IVT----TKLFGFVQFRNETSAQQAISKAN 354
RIYV + DL F YG + IVT +K FGFV + S ++A + +
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAALH 111
Query: 355 GSIFQGKNINVKTARTT 405
S QG+ I V+ A T
Sbjct: 112 ESHVQGRIIEVRRATPT 128
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 30.7 bits (66), Expect = 0.88
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDG--IVT----TKLFGFVQFRNETSAQQAISKAN 354
RIYV + DL F YG + IVT +K FGFV + S ++A + +
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAALH 111
Query: 355 GSIFQGKNINVKTARTT 405
S QG+ I V+ A T
Sbjct: 112 ESHVQGRIIEVRRATPT 128
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIVTTKL-------FGFVQFRNETSAQQ 336
RI+VGG T +L EHF ++ + + K +GF+ F E A++
Sbjct: 67 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEE 121
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPIDGIVTTKL-------FGFVQFRNETSAQQ 336
RI+VGG T +L EHF ++ + + K +GF+ F E A++
Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEE 122
>Z81486-8|CAB03990.2| 338|Caenorhabditis elegans Hypothetical
protein C53A5.10 protein.
Length = 338
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 579 IFFSVSLVSNKVSKIIIRLFVVISTCCVFIFIC 481
IF S N + + +VI+TCC+++F C
Sbjct: 190 IFEGRSAEYNNIPVLFNNFLIVITTCCLYMFFC 222
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 289 KLFGFVQFRNETSAQQAISKANGSIFQGKNINVKTARTTD 408
K F +V F NE AIS NG+ F + + V A+ D
Sbjct: 53 KGFAYVTFENEQQMNTAISGLNGADFGNRVLKVNRAQQRD 92
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +1
Query: 175 RSTAHLRIYVGGLTEKATVDDLYEHFIEYGPIDGIVTT--KLFGFVQFRNETSAQQAISK 348
+S R++VGGL + L + F E+G ++ I + + +V + N ++Q+A
Sbjct: 246 KSQVSRRLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHGQPYAYVVYENTHTSQEACRS 305
Query: 349 ANGSIFQGKN--INVKTARTTDDRREQQQ 429
G+ N I V A+ + E+QQ
Sbjct: 306 LRGACISKGNHPIMVDYAKDLTAQPEKQQ 334
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +1
Query: 175 RSTAHLRIYVGGLTEKATVDDLYEHFIEYGPIDGIVTT--KLFGFVQFRNETSAQQAISK 348
+S R++VGGL + L + F E+G ++ I + + +V + N ++Q+A
Sbjct: 246 KSQVSRRLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHGQPYAYVVYENTHTSQEACRS 305
Query: 349 ANGSIFQGKN--INVKTARTTDDRREQQQ 429
G+ N I V A+ + E+QQ
Sbjct: 306 LRGACISKGNHPIMVDYAKDLTAQPEKQQ 334
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +1
Query: 175 RSTAHLRIYVGGLTEKATVDDLYEHFIEYGPIDGIVTT--KLFGFVQFRNETSAQQAISK 348
+S R++VGGL + L + F E+G ++ I + + +V + N ++Q+A
Sbjct: 223 KSQVSRRLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHGQPYAYVVYENTHTSQEACRS 282
Query: 349 ANGSIFQGKN--INVKTARTTDDRREQQQ 429
G+ N I V A+ + E+QQ
Sbjct: 283 LRGACISKGNHPIMVDYAKDLTAQPEKQQ 311
>U80031-6|AAB37618.2| 491|Caenorhabditis elegans Hypothetical
protein B0554.7 protein.
Length = 491
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 399 SCSFNINVFPLKDTPVCFTDGLLSTCFISKLNKTEQFGCNN--SIYWPVLY 253
+CS I+ L+ P+C G ++CF+S + + F NN Y P +Y
Sbjct: 241 TCSTLISPKILQIVPLCLLCGFNASCFMSIIPTSMHFNQNNFRMTYIPAVY 291
>AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical
protein Y48G1BL.4 protein.
Length = 79
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 190 LRIYVGGLTEKATVDDLYEHFIEYGPIDGIVTTKLFGF--VQFRNETSAQQAI 342
+R+Y+G +A+ D F +YG + + +FG F++++ A I
Sbjct: 2 VRVYIGRFPNRASDRDAEHFFCDYGKLPDAIMKNVFGVGCKDFQDQSDADDII 54
>Z70781-3|CAA94833.2| 352|Caenorhabditis elegans Hypothetical
protein F57A8.5 protein.
Length = 352
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 240 QIIYRSFFGKTTNIYSKMSCRSVFHRMSIQ 151
+I R FGK + S +C+ F RMS+Q
Sbjct: 19 EICNRQAFGKHYGVLSCYACKMFFRRMSVQ 48
>U00065-3|AAK68286.3| 981|Caenorhabditis elegans Hypothetical
protein D1044.8 protein.
Length = 981
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 307 QFRNETSAQQAISKANGSIFQGKNINVKTARTTDD 411
Q +S QQ +S ANG GK + +K TTD+
Sbjct: 328 QLAQASSNQQLMSNANGVYILGKLLAIKKNVTTDE 362
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 27.5 bits (58), Expect = 8.2
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Frame = +1
Query: 193 RIYVGGLTEKATVDDLYEHFIEYGPI-------DGIVTTKLFGFVQFRNETSAQQAISKA 351
RI++ L D LYE F G I D +K +Q+ + A QA+S
Sbjct: 189 RIFIANLAFNVGTDKLYEVFGMAGKITWMDFRIDKEGKSKGVCVIQYTHPIEAVQAVSML 248
Query: 352 NGSIFQGKNINVKTAR 399
NG +N+ VK R
Sbjct: 249 NGQRLFDRNLVVKMDR 264
>AY519853-1|AAR89634.1| 545|Caenorhabditis elegans acetylcholine
receptor (62.5 kD)(acr-23) protein.
Length = 545
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 426 LLFPSVISSSCSFNINVFPLKDTPVC 349
LL+P++ SC N+ FP DT C
Sbjct: 147 LLYPTIYKISCLLNLKYFPF-DTQTC 171
>AF067943-10|AAC17666.3| 545|Caenorhabditis elegans Acetylcholine
receptor protein 23 protein.
Length = 545
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 426 LLFPSVISSSCSFNINVFPLKDTPVC 349
LL+P++ SC N+ FP DT C
Sbjct: 147 LLYPTIYKISCLLNLKYFPF-DTQTC 171
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,993,218
Number of Sequences: 27780
Number of extensions: 260103
Number of successful extensions: 921
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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