Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_M23
(625 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 25 0.60
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.0
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 24 1.4
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 3.2
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 4.2
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 4.2
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 22 5.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.6
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 5.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.8
AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cycl... 21 9.8
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 25.0 bits (52), Expect = 0.60
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 417 PSVISSSCSFNINVFPLKDTPVCF 346
P++ SSC ++ FP D CF
Sbjct: 138 PAIFKSSCEIDVRYFPF-DQQTCF 160
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 1.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 417 PSVISSSCSFNINVFPLKDTPVC 349
P+V SSCS ++ FP D C
Sbjct: 146 PAVYKSSCSIDVEFFPY-DVQTC 167
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.8 bits (49), Expect = 1.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -2
Query: 417 PSVISSSCSFNINVFPLKD 361
P++ SSC N+ FP +
Sbjct: 151 PAIYKSSCEINVEYFPFDE 169
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 22.6 bits (46), Expect = 3.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 417 PSVISSSCSFNINVFPLKDTPVC 349
P++ SSC+ ++ FP D C
Sbjct: 144 PAIYQSSCTIDVTYFPF-DQQTC 165
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 4.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -2
Query: 417 PSVISSSCSFNINVFPLKDTPVC 349
P++ SSC ++ FP D C
Sbjct: 146 PAIYKSSCEIDVEYFPF-DEQTC 167
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.2 bits (45), Expect = 4.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -2
Query: 417 PSVISSSCSFNINVFPLKDTPVC 349
P++ SSC ++ FP D C
Sbjct: 142 PAIYKSSCEIDVEYFPF-DEQTC 163
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 21.8 bits (44), Expect = 5.6
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 292 LFGFVQFRNETSAQQAISKANGSI 363
L VQFRN QAI+ SI
Sbjct: 94 LRNIVQFRNTPEVHQAINTCQPSI 117
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.6
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = -2
Query: 417 PSVISSSCSFNINVFPLKD 361
P + S+C +I FP D
Sbjct: 104 PGIFKSTCKIDITWFPFDD 122
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.6
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = -2
Query: 417 PSVISSSCSFNINVFPLKD 361
P + S+C +I FP D
Sbjct: 104 PGIFKSTCKIDITWFPFDD 122
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.6
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = -2
Query: 417 PSVISSSCSFNINVFPLKD 361
P + S+C +I FP D
Sbjct: 172 PGIFKSTCKIDITWFPFDD 190
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.6
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = -2
Query: 417 PSVISSSCSFNINVFPLKD 361
P + S+C +I FP D
Sbjct: 172 PGIFKSTCKIDITWFPFDD 190
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.8 bits (44), Expect = 5.6
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = -2
Query: 417 PSVISSSCSFNINVFPLKD 361
P + S+C +I FP D
Sbjct: 141 PGIFKSTCKIDITWFPFDD 159
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = -2
Query: 417 PSVISSSCSFNINVFPLKD 361
P + S+C +I FP D
Sbjct: 104 PGIFKSTCKIDIAWFPFDD 122
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = -2
Query: 417 PSVISSSCSFNINVFPLKD 361
P + S+C +I FP D
Sbjct: 104 PGIFGSTCKIDIAWFPFDD 122
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = -2
Query: 417 PSVISSSCSFNINVFPLKD 361
P + S+C +I FP D
Sbjct: 104 PGIFKSTCKMDIAWFPFDD 122
>AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cyclase
beta-3 protein.
Length = 832
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 196 IYVGGLTEKATVDDLYEHFIEY 261
I V G+TEK D + HF+ +
Sbjct: 55 IQVLGVTEKEFFDQMGVHFVGF 76
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,370
Number of Sequences: 438
Number of extensions: 3086
Number of successful extensions: 18
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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