Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M22
         (392 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0478 - 3691581-3691616,3691693-3691842,3691915-3692955,369...    27   7.1  
02_02_0145 + 7163922-7165604                                           27   7.1  
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076...    26   9.4  
03_02_0611 + 9842550-9843035,9844313-9844416,9844586-9844814,984...    26   9.4  

>11_01_0478 -
           3691581-3691616,3691693-3691842,3691915-3692955,
           3693007-3693459
          Length = 559

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 120 YIGYFPSKVSGFFLLIYNI*NYSSRIPLYIT 212
           ++ YFPSK+S +F  I    N + R PL +T
Sbjct: 465 WLTYFPSKISNYFTSIGACSNVAKR-PLIVT 494


>02_02_0145 + 7163922-7165604
          Length = 560

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +3

Query: 111 NGKYIGYFPSKVSGFFLL----IYNI*NYSSRIPLYITGSKIRYKM 236
           N  ++G FP K+  F LL    IYN  N++  +P  I+ + +R +M
Sbjct: 414 NNHFVGDFPKKIWSFELLTNVMIYN--NFTGTLPSEISFNILRIEM 457


>03_06_0448 - 34005581-34005655,34005735-34005830,34006669-34007616,
            34007684-34007851,34007908-34008099,34008164-34008346,
            34008414-34008590,34008667-34012074
          Length = 1748

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 233  NVSQVQNIMHTDSFKCNVQ 289
            N ++ QN+++TDSF+C V+
Sbjct: 1390 NENRNQNLVNTDSFECGVE 1408


>03_02_0611 +
           9842550-9843035,9844313-9844416,9844586-9844814,
           9846121-9846270
          Length = 322

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 23/90 (25%), Positives = 38/90 (42%)
 Frame = +3

Query: 114 GKYIGYFPSKVSGFFLLIYNI*NYSSRIPLYITGSKIRYKMLARYKI*CILIHLSVMFRC 293
           G    ++ S +    L  Y + NY  + P+++T   +    L  Y      + +  M   
Sbjct: 26  GLVTAWYSSNIGVLLLNKYLLSNYGFKYPIFLTMCHMSACALLSYAA-IAWLRVVPMQLV 84

Query: 294 PVGVQRFKVCDISLL*TVFCWSIVIQNASV 383
              VQ  K+  +SL   VFC S+V  N S+
Sbjct: 85  RSRVQLAKIAALSL---VFCGSVVSGNVSL 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,087,800
Number of Sequences: 37544
Number of extensions: 161338
Number of successful extensions: 192
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)