Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M22
         (392 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2467|AAF57864.4|  480|Drosophila melanogaster CG6536-PA...    28   5.1  
AE013599-2466|AAO41361.1|  517|Drosophila melanogaster CG6536-PB...    28   5.1  

>AE013599-2467|AAF57864.4|  480|Drosophila melanogaster CG6536-PA,
           isoform A protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
 Frame = +3

Query: 21  RFWQKIPFFLKIMYITCXXXXXXXXXXXXN-NGK-YIGYFPSKVSGFFLLIYNI*NYSSR 194
           R W+ +   + ++ I              N +GK +I Y  S   G+F L+ N+  YSS 
Sbjct: 209 RTWKTVAIVISLICIILTISVYLYVEKLRNLHGKCFICYLASLFLGYFFLVLNVWKYSS- 267

Query: 195 IPLYITGSKIRY--KMLARYKI*CILIHLSVMF 287
               +T   + Y   M A + +  I IHL + F
Sbjct: 268 -GFCVTAGFLGYFSVMAAFFWLSVIGIHLRIKF 299


>AE013599-2466|AAO41361.1|  517|Drosophila melanogaster CG6536-PB,
           isoform B protein.
          Length = 517

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
 Frame = +3

Query: 21  RFWQKIPFFLKIMYITCXXXXXXXXXXXXN-NGK-YIGYFPSKVSGFFLLIYNI*NYSSR 194
           R W+ +   + ++ I              N +GK +I Y  S   G+F L+ N+  YSS 
Sbjct: 209 RTWKTVAIVISLICIILTISVYLYVEKLRNLHGKCFICYLASLFLGYFFLVLNVWKYSS- 267

Query: 195 IPLYITGSKIRY--KMLARYKI*CILIHLSVMF 287
               +T   + Y   M A + +  I IHL + F
Sbjct: 268 -GFCVTAGFLGYFSVMAAFFWLSVIGIHLRIKF 299


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,197,227
Number of Sequences: 53049
Number of extensions: 311391
Number of successful extensions: 578
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1107890535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)