Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_M21
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 128 4e-31
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 63 2e-11
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 58 9e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 4e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 42 6e-05
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 0.001
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 33 0.028
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb... 29 0.46
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.1
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 1.4
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.2
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 4.2
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 4.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 7.4
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 9.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 128 bits (310), Expect = 4e-31
Identities = 58/64 (90%), Positives = 62/64 (96%)
Frame = -3
Query: 549 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 370
RMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+
Sbjct: 312 RMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVY 371
Query: 369 RKCF 358
RKCF
Sbjct: 372 RKCF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 63.3 bits (147), Expect = 2e-11
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Frame = -3
Query: 549 RMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP- 382
R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G
Sbjct: 365 RLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSD 423
Query: 381 --SIVHRKC 361
+++ ++C
Sbjct: 424 RLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 58.0 bits (134), Expect = 9e-10
Identities = 26/64 (40%), Positives = 45/64 (70%)
Frame = -3
Query: 549 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 370
R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++
Sbjct: 317 RFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIF 375
Query: 369 RKCF 358
R+ F
Sbjct: 376 RRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 52.4 bits (120), Expect = 4e-08
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -3
Query: 471 SVWIGGSILASLSTFQQMWISKQEYDESG 385
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 390 AVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 41.9 bits (94), Expect = 6e-05
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -3
Query: 507 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 385
K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 504 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 367
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 33.1 bits (72), Expect = 0.028
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = -3
Query: 549 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 373
R+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 653 RIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 29.1 bits (62), Expect = 0.46
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 101 SYQFQHIQSSFMRLQTILWRVQYRGRAVKCAPCGAALTPAVTINDLITIISYVQ 262
S+ F ++QSS + R R V A GAA+T A + D+I I+S V+
Sbjct: 316 SHPFANLQSSDNIISFTTKRYHTRPLVVIGAGAGAAVTAAGVLGDMIKIMSQVR 369
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 465 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 364
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 137 RLQTILWRVQYRGRA--VKCAPCGAALTPAVTINDLITIISYVQ 262
R+Q++++ + Y+ + CAP GA T + L TI +YV+
Sbjct: 280 RIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISNYVE 323
>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 287
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 550 PYAEGNHSPRSIHDEDQNH 494
P++ NHSPR IH +NH
Sbjct: 172 PFSCLNHSPRQIHKTVRNH 190
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = -3
Query: 546 MQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 376
+++ I + + I +I PP + ++ W G I + ++WI ++ G +
Sbjct: 549 LEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKMLGSRV 608
Query: 375 VHRK 364
+ K
Sbjct: 609 LQYK 612
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 540 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 430
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 469 RILPLWWRDDFDLHRG 516
RI P+WW D+F G
Sbjct: 178 RIQPIWWMDEFAERNG 193
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 438 LSTFQQMWISKQEYDESGPSIV 373
L + + W KQ++DES S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,006,294
Number of Sequences: 5004
Number of extensions: 36039
Number of successful extensions: 109
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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