Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_M21
(551 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 137 4e-33
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 137 4e-33
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 137 4e-33
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 137 4e-33
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 137 4e-33
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 137 4e-33
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 137 4e-33
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 137 4e-33
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 137 4e-33
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 132 1e-31
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 131 3e-31
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 85 4e-17
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 70 1e-12
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 51 5e-07
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 50 1e-06
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 37 0.008
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 29 1.7
U41540-7|AAM54182.1| 930|Caenorhabditis elegans Hypothetical pr... 27 9.0
U41540-6|AAM54183.1| 934|Caenorhabditis elegans Hypothetical pr... 27 9.0
AL032654-9|CAA21720.1| 404|Caenorhabditis elegans Hypothetical ... 27 9.0
AL023845-4|CAA19541.1| 516|Caenorhabditis elegans Hypothetical ... 27 9.0
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 27 9.0
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 137 bits (332), Expect = 4e-33
Identities = 64/64 (100%), Positives = 64/64 (100%)
Frame = -3
Query: 549 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 370
RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH
Sbjct: 313 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 372
Query: 369 RKCF 358
RKCF
Sbjct: 373 RKCF 376
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 137 bits (332), Expect = 4e-33
Identities = 64/64 (100%), Positives = 64/64 (100%)
Frame = -3
Query: 549 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 370
RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH
Sbjct: 313 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 372
Query: 369 RKCF 358
RKCF
Sbjct: 373 RKCF 376
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 137 bits (332), Expect = 4e-33
Identities = 64/64 (100%), Positives = 64/64 (100%)
Frame = -3
Query: 549 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 370
RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH
Sbjct: 313 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 372
Query: 369 RKCF 358
RKCF
Sbjct: 373 RKCF 376
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 137 bits (332), Expect = 4e-33
Identities = 64/64 (100%), Positives = 64/64 (100%)
Frame = -3
Query: 549 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 370
RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH
Sbjct: 313 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 372
Query: 369 RKCF 358
RKCF
Sbjct: 373 RKCF 376
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 137 bits (332), Expect = 4e-33
Identities = 64/64 (100%), Positives = 64/64 (100%)
Frame = -3
Query: 549 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 370
RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH
Sbjct: 313 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 372
Query: 369 RKCF 358
RKCF
Sbjct: 373 RKCF 376
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 137 bits (332), Expect = 4e-33
Identities = 64/64 (100%), Positives = 64/64 (100%)
Frame = -3
Query: 549 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 370
RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH
Sbjct: 313 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 372
Query: 369 RKCF 358
RKCF
Sbjct: 373 RKCF 376
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 137 bits (332), Expect = 4e-33
Identities = 64/64 (100%), Positives = 64/64 (100%)
Frame = -3
Query: 549 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 370
RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH
Sbjct: 269 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 328
Query: 369 RKCF 358
RKCF
Sbjct: 329 RKCF 332
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 137 bits (332), Expect = 4e-33
Identities = 64/64 (100%), Positives = 64/64 (100%)
Frame = -3
Query: 549 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 370
RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH
Sbjct: 299 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 358
Query: 369 RKCF 358
RKCF
Sbjct: 359 RKCF 362
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 137 bits (332), Expect = 4e-33
Identities = 64/64 (100%), Positives = 64/64 (100%)
Frame = -3
Query: 549 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 370
RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH
Sbjct: 313 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 372
Query: 369 RKCF 358
RKCF
Sbjct: 373 RKCF 376
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 132 bits (320), Expect = 1e-31
Identities = 62/64 (96%), Positives = 62/64 (96%)
Frame = -3
Query: 549 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 370
RMQKEI LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH
Sbjct: 312 RMQKEIQHLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 371
Query: 369 RKCF 358
RKCF
Sbjct: 372 RKCF 375
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 131 bits (317), Expect = 3e-31
Identities = 63/64 (98%), Positives = 63/64 (98%)
Frame = -3
Query: 549 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 370
RMQKEITALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH
Sbjct: 313 RMQKEITALAP-TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 371
Query: 369 RKCF 358
RKCF
Sbjct: 372 RKCF 375
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 84.6 bits (200), Expect = 4e-17
Identities = 38/66 (57%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Frame = -3
Query: 549 RMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPS 379
R+ + P T+K+++ A P ERKY WIGGSIL SL TFQQMW+SK EYDESG S
Sbjct: 370 RLNYALATKCPPTIKLRVFAAPTQAERKYGAWIGGSILGSLGTFQQMWVSKAEYDESGKS 429
Query: 378 IVHRKC 361
IV +KC
Sbjct: 430 IVEKKC 435
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 69.7 bits (163), Expect = 1e-12
Identities = 30/64 (46%), Positives = 45/64 (70%)
Frame = -3
Query: 549 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVH 370
R+ E+ +AP+ KI+I A ER WIGGSI+ASL TF++MW+ K+EY++ G S +H
Sbjct: 311 RLLGEMRKIAPADGKIRISASQERNSLTWIGGSIVASLDTFRKMWLGKKEYEDMGASAMH 370
Query: 369 RKCF 358
++ F
Sbjct: 371 KRFF 374
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 51.2 bits (117), Expect = 5e-07
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = -3
Query: 525 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 376
L P + +++I+ ++Y+VW GGS+LAS S F Q+ +K EY E GPSI
Sbjct: 365 LKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/43 (51%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Frame = -3
Query: 507 KIKIIAPPERKYSVWIGGSILASL--STFQQMWISKQEYDESG 385
KI+I APP RK+ V++GG++LA+L Q W+SK+EY+E G
Sbjct: 341 KIRIEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 383
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 37.1 bits (82), Expect = 0.008
Identities = 15/50 (30%), Positives = 32/50 (64%)
Frame = -3
Query: 549 RMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 400
++++E++ + P+T+ ++ P R + ++G I+AS STF+ IS Q+
Sbjct: 490 KLEQELSTVVPNTIHTQVNISPWRYNAAYLGAQIVASASTFEDSCISLQQ 539
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 308 RSTEPRAAGGSDAHSA*KHFLCTIEGPDSSYSCFEIHICWK 430
++ P AAG S + SA +CT+EG S S + C K
Sbjct: 60 QTPNPNAAGASASGSANYKLMCTLEGHTKSISSAKFSPCGK 100
>U41540-7|AAM54182.1| 930|Caenorhabditis elegans Hypothetical
protein F35H12.2a protein.
Length = 930
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -2
Query: 532 HSPRSIHDEDQNHRATREEVFCMDRWIDPRLPLY--LPADVDLETGI*RVRPLDCAQEVL 359
HS + + D+N T VF ++ DPR+ ++ L + +T + +D +
Sbjct: 225 HSDLQLLEMDRNATGTDSAVFVIEANWDPRVHMFEVLNTETPRDTRVFMTVAIDVIVSEI 284
Query: 358 LSAVRIAASSSPRFGRSHDR 299
+R + + R H+R
Sbjct: 285 SEPIRFSMEAMSRVFHEHER 304
>U41540-6|AAM54183.1| 934|Caenorhabditis elegans Hypothetical
protein F35H12.2b protein.
Length = 934
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -2
Query: 532 HSPRSIHDEDQNHRATREEVFCMDRWIDPRLPLY--LPADVDLETGI*RVRPLDCAQEVL 359
HS + + D+N T VF ++ DPR+ ++ L + +T + +D +
Sbjct: 225 HSDLQLLEMDRNATGTDSAVFVIEANWDPRVHMFEVLNTETPRDTRVFMTVAIDVIVSEI 284
Query: 358 LSAVRIAASSSPRFGRSHDR 299
+R + + R H+R
Sbjct: 285 SEPIRFSMEAMSRVFHEHER 304
>AL032654-9|CAA21720.1| 404|Caenorhabditis elegans Hypothetical
protein Y52B11A.9 protein.
Length = 404
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -3
Query: 483 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*ALCASLPPAAR 322
+RK V G A +S F + K++ DE GPS RK S PAA+
Sbjct: 213 DRKLDVK-SGVASAKISIFDMPKVKKEDPDEPGPSQPSRKSGKKRSRSRSPAAK 265
>AL023845-4|CAA19541.1| 516|Caenorhabditis elegans Hypothetical
protein Y51B9A.6 protein.
Length = 516
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 116 HIQSSFMRLQTILWRVQYRGRAVK 187
++ + + TILW V YR RAVK
Sbjct: 225 YLHGAILGALTILWAVYYRDRAVK 248
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 76 IIKYEIQKNSEKLKKKPRADPQP 8
I+K + KN KLK KP P+P
Sbjct: 145 ILKGGVLKNEPKLKSKPNPKPEP 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,516,284
Number of Sequences: 27780
Number of extensions: 213953
Number of successful extensions: 515
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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