Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_M20
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 236 1e-62
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 228 2e-60
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 148 3e-36
02_05_0756 - 31534011-31534141,31534235-31535338,31535448-315356... 31 0.57
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468 29 3.0
11_01_0049 - 375049-375342,375596-375660,375907-375956,376492-37... 29 4.0
04_03_0350 + 14755619-14755692,14755697-14755883,14755964-147560... 28 5.3
10_08_0139 + 15145310-15145622,15145820-15145881,15145975-151463... 28 7.0
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 27 9.2
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 236 bits (577), Expect = 1e-62
Identities = 105/183 (57%), Positives = 143/183 (78%)
Frame = +2
Query: 11 ARRLQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL 190
A R + L + +++ RK IF RA+QY +EY +E++ ++L R+AR +G +YV EAKL
Sbjct: 27 ADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKL 86
Query: 191 AFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKS 370
FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKS
Sbjct: 87 LFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKS 146
Query: 371 VRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLW 550
VREL+YKRG+ KLN +R+P+ +N +IE+ L K +IIC+EDL+HEI TVG FK A+NFLW
Sbjct: 147 VRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANNFLW 206
Query: 551 PIQ 559
P +
Sbjct: 207 PFK 209
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 562 LNNPTGGWRKKTIHYVDGGDFG 627
L P GG +KK HYV+GGD G
Sbjct: 210 LKAPLGGLKKKRNHYVEGGDAG 231
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 228 bits (558), Expect = 2e-60
Identities = 104/179 (58%), Positives = 139/179 (77%), Gaps = 6/179 (3%)
Frame = +2
Query: 41 RSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVN 220
+ SI+ RK IF RA+QY +EY +E++ ++L R+AR +G +YV E KL FV+RIRG+N
Sbjct: 36 KKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGIN 95
Query: 221 QVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF 400
+ PK RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+
Sbjct: 96 AMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGY 155
Query: 401 AKLNGKRVPITSNSLIEKR------LSKQNIICVEDLIHEIFTVGEKFKYASNFLWPIQ 559
KLN +R+P+T+N +IE+ L K +IIC+EDL+HEI TVG FK A+NFLWP +
Sbjct: 156 GKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFK 214
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 562 LNNPTGGWRKKTIHYVDGGDFG 627
L P GG +KK HYV+GGD G
Sbjct: 215 LKAPLGGLKKKRNHYVEGGDAG 236
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 148 bits (359), Expect = 3e-36
Identities = 76/182 (41%), Positives = 118/182 (64%), Gaps = 7/182 (3%)
Frame = +2
Query: 35 KRRSASIKKRKE----IFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE---AKLA 193
+R++A ++R++ KR E +V+E+R KE D +R+ + + R P E +KL
Sbjct: 32 ERKAAKRQRRRDDGKGAIKRPEDFVREFRNKELDFVRMKTRLKVRK--LPPAETLNSKLV 89
Query: 194 FVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSV 373
F IRI G + P +R++L+ RL Q+ GVF++ AT+ L + EP+I +G+PNLK+V
Sbjct: 90 FAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNV 149
Query: 374 RELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWP 553
++L+YK+G L+ + P+TSN LIEK L + IIC+EDL+HEI +VG F+ ASNFL P
Sbjct: 150 KDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFREASNFLMP 209
Query: 554 IQ 559
+
Sbjct: 210 FK 211
>02_05_0756 -
31534011-31534141,31534235-31535338,31535448-31535692,
31535789-31535940,31536051-31536158
Length = 579
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -3
Query: 217 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 62
D TN +KC G+ A++ ++S QS I +LDA ++ G ++ FP
Sbjct: 382 DPTNMAEKCKEGPQGNRFAASLNNVSFQSPAIDVLDAYYYSSGHGVYEEDFP 433
>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
Length = 1078
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Frame = +2
Query: 176 GEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGY 355
G+ K I +RG + ++ + +L +LR ++ ++N R+ + WG+
Sbjct: 621 GKMKFLEHIGLRGCHSLAELPSSITELPKLRHLSIDE-TKINAIPRGFKRLENLEMLWGF 679
Query: 356 P-------------NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVE 487
P +L+ + L R + + VP +S + + K +K+N+IC+E
Sbjct: 680 PVHIIIENTGEYRCSLEELGPLSKLRKLKLIGLENVPYSSMATLAKLKTKENLICLE 736
>11_01_0049 -
375049-375342,375596-375660,375907-375956,376492-376541
Length = 152
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 57 RRGKKSLREPNNMSKNTASRSVMKSDWQDRLVTVA 161
R+G KS+ P N K+ R +M S+ + L TVA
Sbjct: 108 RKGTKSIDHPCNTIKSMGDRGLMSSESRRMLYTVA 142
>04_03_0350 +
14755619-14755692,14755697-14755883,14755964-14756072,
14756157-14756379,14756716-14756794,14757222-14757273,
14757354-14757416,14757519-14757616,14757970-14758031,
14758066-14758159,14758430-14758509,14758617-14758686,
14758807-14758864,14758973-14759037,14759127-14759221,
14759318-14759402
Length = 497
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 459 LANRTSSALRISSMRYLLSVRSSSTQVTSCGPFKLEQPDWR 581
+ ++T+ L + + L+SV SS + TSCG + + DWR
Sbjct: 1 MCHKTALLLSVLCLT-LVSVLSSMPRKTSCGSIRALREDWR 40
>10_08_0139 +
15145310-15145622,15145820-15145881,15145975-15146355,
15146413-15146929,15147031-15147161
Length = 467
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -3
Query: 217 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 62
DTTN +K G+ A++ ++S +S I +LDA ++ G ++ FP
Sbjct: 269 DTTNATNKLCKGPQGNQFAASLNNVSFESPAIDVLDAYYYGSGRGVYEEDFP 320
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 462 LSLFSMSELEVIGTRFPFSLAKPRLYTNSRTLFKLG*PHAI 340
L L S+ LE + RFP L K + L KL PH I
Sbjct: 310 LKLPSIPALEELRKRFPLQLVKDLIPAGGDYLLKLPMPHVI 350
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,834,999
Number of Sequences: 37544
Number of extensions: 325406
Number of successful extensions: 972
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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