Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M20
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   237   6e-63
AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical ...    28   4.8  
AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical ...    28   6.3  
AC024807-1|AAF59529.5|  704|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  237 bits (579), Expect = 6e-63
 Identities = 103/168 (61%), Positives = 139/168 (82%)
 Frame = +2

Query: 56  KKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPK 235
           +K+ + FKRAE+YV+EYR  +++ +RL R+A  +G++YVP E K+AFV+RIRG+NQ+ PK
Sbjct: 41  EKKTQYFKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPK 100

Query: 236 VRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNG 415
            RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK++G
Sbjct: 101 PRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDG 160

Query: 416 KRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPIQ 559
            RVPIT N+++E+ L K NIIC+EDL HEI TVG  FK A+NFLWP +
Sbjct: 161 NRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFK 208



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 18/22 (81%), Positives = 20/22 (90%)
 Frame = +1

Query: 562 LNNPTGGWRKKTIHYVDGGDFG 627
           LNNPTGGW KKT H+V+GGDFG
Sbjct: 209 LNNPTGGWTKKTNHFVEGGDFG 230


>AF016672-5|AAB66120.1|  951|Caenorhabditis elegans Hypothetical
           protein F56D12.6b protein.
          Length = 951

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/108 (17%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
 Frame = +2

Query: 26  ITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL-AFVI 202
           ++LK    ++KK +E      Q+VKE    E + ++   ++ N+ ++Y+   + + A  +
Sbjct: 1   MSLKVLQENLKKSEETVAEVAQFVKERLSVEDEYVKAINRSVNKVSHYIQNGSSIDAMWL 60

Query: 203 RIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIA 346
             +G  ++  ++  V+ +  L+ ++  V             + +P +A
Sbjct: 61  LTKGTMELMAEIH-VMLVKNLQDLSREVLKYKEDVNRTRKELKQPQVA 107


>AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical
           protein F27B3.7 protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
 Frame = +3

Query: 42  VPLPLRRGK-----KSLREPNNMSKNTASRSVMKSD 134
           +PL +RR       KS+ +P N+  NTA  ++M SD
Sbjct: 25  IPLEIRRKHNLTQLKSMIDPQNLDDNTALEAIMNSD 60


>AC024807-1|AAF59529.5|  704|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.1 protein.
          Length = 704

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = +3

Query: 372 SESWCTNAVSPN*TGSVSRSPPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTSCG 551
           SE+   N  +P  +  ++ SPP       +A+ + S    S++RY+ S  S S Q +   
Sbjct: 564 SENPAENDENPEISKIMTSSPPGTPESEPIADDSESEDEKSTIRYIPSKNSESLQNSMDS 623

Query: 552 PFKLEQPDWRLAQEDD 599
              +E+ + +L    D
Sbjct: 624 SDVIEEEEVKLVPNGD 639


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,079,623
Number of Sequences: 27780
Number of extensions: 278886
Number of successful extensions: 984
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)