Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M19
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    50   1e-07
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    48   8e-07
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    48   8e-07
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    28   0.65 
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   2.0  
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    25   3.5  
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    25   3.5  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    25   3.5  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    25   3.5  

>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 24/72 (33%), Positives = 31/72 (43%)
 Frame = +2

Query: 119 EPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 298
           EP W  +FAKALEG ++++L+ NIGS                                  
Sbjct: 39  EPIWATIFAKALEGKDLKELLLNIGSAAAAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEE 98

Query: 299 XXDDDMGFGLFD 334
             D+DMGFGLFD
Sbjct: 99  ESDEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 47.6 bits (108), Expect = 8e-07
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
 Frame = +2

Query: 74  VTGEKIHH-TESG-V*CEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXX 247
           +T +K+   T++G V  EP W  +FAKALEG ++++L+ NIGS                 
Sbjct: 22  ITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGS-AGAASAPTAAGAGAAA 80

Query: 248 XXXXXXXXXXXXXXXXXXXDDDMGFGLFD 334
                              D+DMGFGLFD
Sbjct: 81  PAEAAEEEKKEEAKEEEESDEDMGFGLFD 109


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 47.6 bits (108), Expect = 8e-07
 Identities = 25/72 (34%), Positives = 32/72 (44%)
 Frame = +2

Query: 119 EPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 298
           EP W  +FAKALEG ++++L+ NIGSG                                 
Sbjct: 39  EPIWATIFAKALEGKDLKELLLNIGSG-AGAAPVAGGAAAPAAADGEAPAEEKEEAKEEE 97

Query: 299 XXDDDMGFGLFD 334
             D+DMGFGLFD
Sbjct: 98  ESDEDMGFGLFD 109


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 27.9 bits (59), Expect = 0.65
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -2

Query: 201 TPDPML---VIKSRTLMPSKAFANRPGQYGSHYTP 106
           +P+P+     IK     PSK F NRP ++ SH +P
Sbjct: 297 SPEPIFNNRFIKIFWYNPSKGFHNRPKKFASHKSP 331


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 192 PMLVIKSRTLMPSKAFANRPGQYGSHYTPLSVW*IFSPVTRHRITR 55
           P+L+   R  +PS A   R   +G   TPL++      +TR  + R
Sbjct: 521 PVLIEAMRQAIPSDALTVRSETFGESNTPLTLQQWHKWITRESVKR 566


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +2

Query: 305 DDDMGFGLFD 334
           D+DMGFGLFD
Sbjct: 303 DEDMGFGLFD 312


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +2

Query: 305 DDDMGFGLFD 334
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +2

Query: 305 DDDMGFGLFD 334
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +2

Query: 305 DDDMGFGLFD 334
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,301,247
Number of Sequences: 5004
Number of extensions: 19061
Number of successful extensions: 53
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)