Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M19
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    54   6e-08
03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127...    27   7.7  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 31/89 (34%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = +2

Query: 74  VTGEKIHHT--ESGV*CEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXX 247
           +T EKI      + +  E YWPGLFAK LE  +V DLI ++GSG                
Sbjct: 22  ITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILSVGSGGGAAPVAAAAAPAAGG 81

Query: 248 XXXXXXXXXXXXXXXXXXXDDDMGFGLFD 334
                              DDDMGF LFD
Sbjct: 82  GAAAAPAAEEKKEEAKEESDDDMGFSLFD 110


>03_05_0559 -
           25610474-25610951,25611149-25611890,25612355-25612744,
           25613041-25613099,25613186-25613326,25613449-25613545,
           25614999-25615185
          Length = 697

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = +2

Query: 44  TPP--YLVIRCRVTGEKIHH 97
           TPP  Y+  RCR+ G  IHH
Sbjct: 196 TPPSGYVCYRCRIPGHFIHH 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,438,689
Number of Sequences: 37544
Number of extensions: 128647
Number of successful extensions: 201
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)