Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M19
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    71   3e-13
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    67   4e-12
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z81100-3|CAD92386.1|  333|Caenorhabditis elegans Hypothetical pr...    26   9.2  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 70.9 bits (166), Expect = 3e-13
 Identities = 44/111 (39%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
 Frame = +2

Query: 17  MASN*-LACVTPPYLVI--RCRVTGEKIHHT--ESGV*CEPYWPGLFAKALEGINVRDLI 181
           MASN  LACV    ++      +TGEKI      + V  EPYWPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60

Query: 182 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 334
           T++ SG                                   DDDMGFGLFD
Sbjct: 61  TSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 67.3 bits (157), Expect = 4e-12
 Identities = 43/111 (38%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
 Frame = +2

Query: 17  MASN*-LACVTPPYLVI--RCRVTGEKIHHT--ESGV*CEPYWPGLFAKALEGINVRDLI 181
           MASN  LACV    ++      +TGEKI      + V  EP WPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60

Query: 182 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 334
           T++ SG                                   DDDMGFGLFD
Sbjct: 61  TSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 305 DDDMGFGLFD 334
           DDDMGFGLFD
Sbjct: 303 DDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 305 DDDMGFGLFD 334
           DDDMGFGLFD
Sbjct: 98  DDDMGFGLFD 107


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +2

Query: 305 DDDMGFGLFD 334
           DDDMGFGLFD
Sbjct: 101 DDDMGFGLFD 110


>Z81100-3|CAD92386.1|  333|Caenorhabditis elegans Hypothetical
           protein K08G2.9 protein.
          Length = 333

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 93  TILKAVCNVSRTGL-VYLQRPWRASMFVI 176
           TI+ +   VS T L +YLQ+P+R + FV+
Sbjct: 280 TIITSFHGVSATILMIYLQKPYRDAFFVV 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,178,556
Number of Sequences: 27780
Number of extensions: 107317
Number of successful extensions: 193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)