Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M19
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   0.58 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   0.58 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   5.4  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   5.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   5.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   9.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    20   9.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 0.58
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 364 EYSCFKIKLLVKKTEAHIII 305
           EYSC K+ LL K+  ++ +I
Sbjct: 227 EYSCLKVDLLFKREFSYYLI 246


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 0.58
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 364 EYSCFKIKLLVKKTEAHIII 305
           EYSC K+ LL K+  ++ +I
Sbjct: 227 EYSCLKVDLLFKREFSYYLI 246


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 141 NRPGQYGSHYTPL 103
           N PGQ  + YTP+
Sbjct: 348 NHPGQISNGYTPV 360


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 141 NRPGQYGSHYTPL 103
           N PGQ  + YTP+
Sbjct: 59  NHPGQISNGYTPV 71


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 141 NRPGQYGSHYTPL 103
           N PGQ  + YTP+
Sbjct: 348 NHPGQISNGYTPV 360


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 125 YWPGLFAKALEGINVRDLITN 187
           +WP   + ALEG + +  I N
Sbjct: 223 FWPSFNSAALEGDDQQRAIIN 243


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -2

Query: 174 SRTLMPSKAFANRPGQYGSHYTPLSVW*IFSPVTRHRI 61
           S   +  ++F    G +G   +P++    +SP+T H +
Sbjct: 239 SELAVAGESFTVHDGIFGMALSPVTNNLYYSPLTSHSL 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,192
Number of Sequences: 438
Number of extensions: 1400
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)