Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_M17
(522 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 291 6e-80
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 245 3e-66
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 128 5e-31
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 116 2e-27
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 111 6e-26
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 111 6e-26
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 103 2e-23
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 101 9e-23
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 100 2e-22
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 97 1e-21
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 97 1e-21
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 95 7e-21
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 94 1e-20
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 94 1e-20
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 91 7e-20
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 89 3e-19
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 87 2e-18
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 81 1e-16
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 71 1e-13
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 70 2e-13
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 70 2e-13
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 63 3e-11
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 58 8e-10
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 36 0.005
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 32 0.045
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 30 0.24
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 27 1.3
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 27 1.7
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 2.2
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 25 5.2
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 25 5.2
SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyce... 25 9.0
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 9.0
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 25 9.0
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 25 9.0
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 9.0
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 291 bits (713), Expect = 6e-80
Identities = 133/171 (77%), Positives = 156/171 (91%)
Frame = +1
Query: 10 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLVLSPTRELATQIQ 189
+Q R+I+ I KGRDVIAQAQSGTGKTATFSI ILQS+D ++R+TQ L+LSPTRELA QIQ
Sbjct: 47 VQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQ 106
Query: 190 KVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKM 369
V+LALGD MNVQCHACIGGT++G DI+KLDYGQHVVSGTPGRV DMIRRR LRTR++KM
Sbjct: 107 NVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKM 166
Query: 370 LVLDEADEMLNKGFKEQIYDVYRYLPPGTQVVLISGTLPHEILEMTSKFMT 522
L+LDEADE+LN+GFKEQIYD+YRYLPPGTQVV++S TLP ++LEMT+KF T
Sbjct: 167 LILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTT 217
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 245 bits (600), Expect = 3e-66
Identities = 112/170 (65%), Positives = 145/170 (85%)
Frame = +1
Query: 10 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLVLSPTRELATQIQ 189
IQQR+I+PI+ RDV+AQAQSGTGKTATFSIS+LQ +DT+L++ Q L+L+PTRELA QIQ
Sbjct: 45 IQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQ 104
Query: 190 KVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKM 369
KV++ALGD MNV+CHACIGGT + +D+ L G HVV GTPGRV DMI+RR L T +++M
Sbjct: 105 KVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQM 164
Query: 370 LVLDEADEMLNKGFKEQIYDVYRYLPPGTQVVLISGTLPHEILEMTSKFM 519
VLDEADEML++GFK+QIYD+++ LPP QVVL+S T+P ++LE+T+KFM
Sbjct: 165 FVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFM 214
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 128 bits (309), Expect = 5e-31
Identities = 68/159 (42%), Positives = 93/159 (58%)
Frame = +1
Query: 10 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLVLSPTRELATQIQ 189
IQ+ SI + GRD++A+A++GTGKTA F I L+ +DT + Q L+L PTRELA Q
Sbjct: 70 IQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTS 129
Query: 190 KVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKM 369
+V LG MNV+ GGT L +DI +L+ H+V GTPGRV D+ + V
Sbjct: 130 QVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTT 189
Query: 370 LVLDEADEMLNKGFKEQIYDVYRYLPPGTQVVLISGTLP 486
V+DEAD++L+ F I + Y P Q+ L S T P
Sbjct: 190 FVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFP 228
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 116 bits (280), Expect = 2e-27
Identities = 66/175 (37%), Positives = 99/175 (56%), Gaps = 5/175 (2%)
Frame = +1
Query: 10 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLVLSPTRELATQIQ 189
+QQ I + G DV+ QA+SG GKTA F +S LQ ++ E VLVL TRELA QI+
Sbjct: 77 VQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIK 136
Query: 190 KVILALGDFM-NVQCHACIGGTNLGEDI---RKLDYGQHVVSGTPGRVFDMIRRRVLRTR 357
++ +V+ GG N+ +D+ + H+V TPGR+ ++R ++L+
Sbjct: 137 NEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVN 196
Query: 358 SIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPGTQVVLISGTLPHEILEMTSKFM 519
S+K VLDE D++L + I +V+R PP QV++ S TL +EI + KFM
Sbjct: 197 SVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFM 251
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 111 bits (267), Expect = 6e-26
Identities = 64/171 (37%), Positives = 99/171 (57%), Gaps = 4/171 (2%)
Frame = +1
Query: 16 QRSILPIVKG---RDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLVLSPTRELATQI 186
Q LP++ R++I Q+QSGTGKTA F++++L +D ++ + Q + L+P+RELA QI
Sbjct: 141 QEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQI 200
Query: 187 QKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIK 366
V+ +G + V+ G + K+D +V GTPG V D+++RR L R IK
Sbjct: 201 MDVVTEMGKYTEVK--TAFGIKDSVPKGAKID--AQIVIGTPGTVMDLMKRRQLDARDIK 256
Query: 367 MLVLDEADEMLN-KGFKEQIYDVYRYLPPGTQVVLISGTLPHEILEMTSKF 516
+ VLDEAD ML+ +G +Q + LP TQ+VL S T + + +F
Sbjct: 257 VFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERF 307
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 111 bits (267), Expect = 6e-26
Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 2/166 (1%)
Frame = +1
Query: 10 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRE--TQVLVLSPTRELATQ 183
IQ+++I +++GRDV+ A++G+GKTA F I +++ L +TL T+ L+LSP RELA Q
Sbjct: 95 IQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQ 154
Query: 184 IQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSI 363
KV+ +++ A +GG +L E L +V TPGR + L SI
Sbjct: 155 TVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSI 214
Query: 364 KMLVLDEADEMLNKGFKEQIYDVYRYLPPGTQVVLISGTLPHEILE 501
+ +V DEAD + GF Q+ ++ LP Q +L S TLP +++
Sbjct: 215 EYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVD 260
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 103 bits (247), Expect = 2e-23
Identities = 56/166 (33%), Positives = 93/166 (56%), Gaps = 4/166 (2%)
Frame = +1
Query: 10 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQSL---DTTLRETQVLVLSPTRELAT 180
IQ ++I + G+D++ A +G+GKTA F + IL+ L + T+VL+L PTRELA
Sbjct: 285 IQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAM 344
Query: 181 QIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRR-RVLRTR 357
Q V + F ++ CIGG +L ++L +V TPGR D +R +
Sbjct: 345 QCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVE 404
Query: 358 SIKMLVLDEADEMLNKGFKEQIYDVYRYLPPGTQVVLISGTLPHEI 495
+I+++V+DEAD ML GF +++ ++ + P Q +L S T+ ++
Sbjct: 405 NIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKV 450
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 101 bits (241), Expect = 9e-23
Identities = 60/175 (34%), Positives = 90/175 (51%), Gaps = 5/175 (2%)
Frame = +1
Query: 10 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISIL-----QSLDTTLRETQVLVLSPTREL 174
IQQ++ + GRD++ + +G+GKT ++ + + Q L + VLVL+PTREL
Sbjct: 148 IQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTREL 207
Query: 175 ATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRT 354
A QIQ+ G ++ GG G IR L G + TPGR+ DM+
Sbjct: 208 AVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNL 267
Query: 355 RSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPGTQVVLISGTLPHEILEMTSKFM 519
R + LVLDEAD ML+ GF+ QI + + P Q V+ S T P E+ + ++
Sbjct: 268 RRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYL 322
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 100 bits (239), Expect = 2e-22
Identities = 60/171 (35%), Positives = 94/171 (54%), Gaps = 6/171 (3%)
Frame = +1
Query: 10 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLVLSPTRELATQIQ 189
IQ+ I I++GR+ I A++G+GKTA F++ I++ L+L+PTRELA QI
Sbjct: 33 IQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQID 92
Query: 190 KVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIR----RRVLRTR 357
+ ALG +N++ +GG ++ L HVV TPGR+ D+IR + R
Sbjct: 93 EQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLR 152
Query: 358 SIKMLVLDEADEMLNKGFKEQIYDVYRYLPPG--TQVVLISGTLPHEILEM 504
IK LV+DEAD +L+ F + + D + LP Q +L + T+ I ++
Sbjct: 153 RIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQL 203
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 97.5 bits (232), Expect = 1e-21
Identities = 54/163 (33%), Positives = 91/163 (55%), Gaps = 1/163 (0%)
Frame = +1
Query: 10 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLVLSPTRELATQIQ 189
IQQ +I ++ RDVI AQ+G+GKTA F++ ++Q L +VL+PTRELA QI
Sbjct: 72 IQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQIS 131
Query: 190 KVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRR-RVLRTRSIK 366
+ A+G + V+ +GG ++ L HV+ TPGR+ D + + +++K
Sbjct: 132 EQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLK 191
Query: 367 MLVLDEADEMLNKGFKEQIYDVYRYLPPGTQVVLISGTLPHEI 495
L++DEAD +L+ F I + + +P + +L S T+ ++
Sbjct: 192 YLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKV 234
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 97.1 bits (231), Expect = 1e-21
Identities = 61/163 (37%), Positives = 96/163 (58%), Gaps = 6/163 (3%)
Frame = +1
Query: 10 IQQRSILPIVKGRDVIAQAQSGTGKTATF---SISILQSLDTTLRE-TQVLVLSPTRELA 177
IQ+RSI P++ GRDV+ A++G+GKT F +I +L +L R T V+++SPTRELA
Sbjct: 115 IQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELA 174
Query: 178 TQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRR-RVLRT 354
QI V L + + IGG N + KL G +++ TPGR+ D ++ +
Sbjct: 175 LQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVF 234
Query: 355 RSIKMLVLDEADEMLNKGFKEQIYDVYRYLP-PGTQVVLISGT 480
R+++ LV+DEAD +L GF++++ + + LP Q +L S T
Sbjct: 235 RNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSAT 277
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 94.7 bits (225), Expect = 7e-21
Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 5/170 (2%)
Frame = +1
Query: 10 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQSLD----TTLRETQVLVLSPTRELA 177
IQ++ I +KGRD++ A++G+GKT F + ++++L T+L LV+SPTRELA
Sbjct: 65 IQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELA 124
Query: 178 TQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRV-LRT 354
Q + ++ +G + IGG N E+ +L +++ TPGR+ I + V T
Sbjct: 125 IQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLLQHIDQAVNFDT 183
Query: 355 RSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPGTQVVLISGTLPHEILEM 504
++ML+LDEAD +L+ GF+ + + LP Q +L S T + ++
Sbjct: 184 SGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDL 233
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 94.3 bits (224), Expect = 1e-20
Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 8/170 (4%)
Frame = +1
Query: 34 IVKGRDVIAQAQSGTGKTATFSISILQ---SLDTTLRETQVLVLSPTRELATQIQKVILA 204
++ GRDV+ A++G+GKT F I LQ L +VLV+SPTRELA Q + + +
Sbjct: 199 LLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNS 258
Query: 205 LGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVLDE 384
L N++ GG E R V+ GTPGR+ D+I + + LVLDE
Sbjct: 259 LIQGTNLKAVVVYGGAPKSEQARAAKNAS-VIIGTPGRLLDLINDGSIDCSQVGYLVLDE 317
Query: 385 ADEMLNKGFKEQIYDVYRYLPPGT-----QVVLISGTLPHEILEMTSKFM 519
AD ML+ GF++ I ++ + P T Q V S T P + + + F+
Sbjct: 318 ADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFL 367
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 93.9 bits (223), Expect = 1e-20
Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 8/178 (4%)
Frame = +1
Query: 10 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQSL--DTTLRETQ---VLVLSPTREL 174
IQ ++I I GRDVI A++G+GKT F + + + + L+ + ++++PTREL
Sbjct: 444 IQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTREL 503
Query: 175 ATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRR---RV 345
A QI + +N++ GG + + I L G +V TPGR+ D++ RV
Sbjct: 504 AVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRV 563
Query: 346 LRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPGTQVVLISGTLPHEILEMTSKFM 519
LVLDEAD M + GF+ Q+ + + P Q VL S T P + + K +
Sbjct: 564 TNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVL 621
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 91.5 bits (217), Expect = 7e-20
Identities = 62/174 (35%), Positives = 93/174 (53%), Gaps = 9/174 (5%)
Frame = +1
Query: 10 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQSL------DTTLRETQVLVLSPTRE 171
+Q +I ++G+D++AQA++G+GKTA + I IL+ L D R L+L PTRE
Sbjct: 40 VQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRE 99
Query: 172 LATQIQKVILALGDFMNVQCHACIGGTNLGEDIRK---LDYGQHVVSGTPGRVFDMIRRR 342
LA Q+ V+ L F + TN + +++ LD V++ TP R +
Sbjct: 100 LAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIA-TPSRCVVHVASG 158
Query: 343 VLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPGTQVVLISGTLPHEILEM 504
VL +K LV+DEAD ML+ G+ E + + R LP GTQ L+S TL I +
Sbjct: 159 VLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASL 212
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 89.4 bits (212), Expect = 3e-19
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 9/153 (5%)
Frame = +1
Query: 16 QRSILPIVKGR-DVIAQAQSGTGKTATFSISILQSLDTT--LRETQV------LVLSPTR 168
QR+ +P++ R D+I A++G+GKTA F I ++ ++ L E+ + +VL+PTR
Sbjct: 276 QRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTR 335
Query: 169 ELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVL 348
ELA QIQ + + +C + +GG E ++ G H+V TPGR+ D + RR+
Sbjct: 336 ELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLF 395
Query: 349 RTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLP 447
+V+DEAD ML+ GF++ + + LP
Sbjct: 396 VLSQCTYVVMDEADRMLDMGFEDDVNKILSSLP 428
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 86.6 bits (205), Expect = 2e-18
Identities = 65/192 (33%), Positives = 96/192 (50%), Gaps = 22/192 (11%)
Frame = +1
Query: 10 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISIL--------------QSLDTTLRETQV 147
+Q+ SI + GRD++A AQ+G+GKTA F IL Q R +
Sbjct: 195 VQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKA 254
Query: 148 ----LVLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPG 315
L+L+PTREL QI + V+ A GG ++ IR++D G ++S TPG
Sbjct: 255 YPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPG 314
Query: 316 RVFDMIRRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPGT----QVVLISGTL 483
R+ D+I R + +IK LVLDEAD ML+ GF+ QI + + Q ++ S T
Sbjct: 315 RLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATF 374
Query: 484 PHEILEMTSKFM 519
P +I + F+
Sbjct: 375 PRDIQLLARDFL 386
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 80.6 bits (190), Expect = 1e-16
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 8/167 (4%)
Frame = +1
Query: 43 GRDVIAQAQSGTGKTATFSISILQSL--DTTLRETQVLVLSPTRELATQIQKVILALGDF 216
G D+I +A +G+GKT F I IL+ + + Q LV++PTRELA QI + +
Sbjct: 159 GFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPS 218
Query: 217 MNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVL--RTRSIKMLVLDEAD 390
N++ + GG + + R L+ HVV TPGR++ +I L + IK LVLDEAD
Sbjct: 219 PNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEAD 278
Query: 391 EMLNKGFKEQIYDVYRYL--PPGT--QVVLISGTLPHEILEMTSKFM 519
+L K E++ + L P T Q + S T + + K M
Sbjct: 279 RLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDEGLQQRLKKNM 325
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 70.9 bits (166), Expect = 1e-13
Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 13/171 (7%)
Frame = +1
Query: 10 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQSL---DTTLRETQVLVLSPTRELAT 180
+Q +I +K +D++ +A +G+GKT + + + DT L+++PTRELAT
Sbjct: 27 VQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELAT 86
Query: 181 QI---QKVILA-----LGDFMNVQCHACIGGTN-LGEDIRKL-DYGQHVVSGTPGRVFDM 330
QI K +LA L + IGG L D+ + VV GTPGR+ +M
Sbjct: 87 QIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSVVIGTPGRLNEM 146
Query: 331 IRRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPGTQVVLISGTL 483
+ + ++ +++L+LDEAD +++ GF+ + + LP + L S T+
Sbjct: 147 LSH--ISSKHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSATM 195
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 70.1 bits (164), Expect = 2e-13
Identities = 48/171 (28%), Positives = 90/171 (52%), Gaps = 9/171 (5%)
Frame = +1
Query: 10 IQQRSILPIVKGRD-VIAQAQSGTGKTATFSISILQSL---DTTLRETQV--LVLSPTRE 171
+QQR + + + + QA++GTGKT F + + + L +++ ++LSPTRE
Sbjct: 64 VQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRE 123
Query: 172 LATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQ-HVVSGTPGRVFDMIRR-RV 345
LA QI + L ++ IGG + + + G +++ TPGR+ D ++ R+
Sbjct: 124 LALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRI 183
Query: 346 LRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYL-PPGTQVVLISGTLPHEI 495
L + S +LDEAD +++ GF E I +++ + T+ + S T+P ++
Sbjct: 184 LESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKV 234
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 70.1 bits (164), Expect = 2e-13
Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Frame = +1
Query: 46 RDVIAQAQSGTGKTATFSISILQ-------SLDTTLRETQVLVLSPTRELATQIQKVILA 204
+D +AQ+G+GKT + + I+Q +L T ++++PTREL QI V
Sbjct: 179 KDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANK 238
Query: 205 LGD----FMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRR-RVLRTRSIKM 369
L + V C+ IGG + ++ G +++ GTPGR+ D + L ++
Sbjct: 239 LNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRW 297
Query: 370 LVLDEADEMLNKGFKEQIYDVYRYLPPGTQVVLISGTLPHEILEM 504
+VLDE D +++ GF+E + + YL + ++ ++P + M
Sbjct: 298 VVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTM 342
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 62.9 bits (146), Expect = 3e-11
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Frame = +1
Query: 43 GRDVIAQAQSGTGKTATFSISILQSLD-TTLRETQVLVLSPTRELATQIQKVILALGDFM 219
G DV A +G+GKT ++ I I+Q L T+ + +V+ PTREL Q+ K
Sbjct: 173 GGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGA 232
Query: 220 NVQCHACIGGTNLGEDIRKLDYGQH-----VVSGTPGRVFDMIRR-RVLRTRSIKMLVLD 381
+Q A G +L + +L+ ++ V+ TPGR+ D IR + ++ +V+D
Sbjct: 233 GLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVID 292
Query: 382 EADEMLNKGFKEQI 423
EAD +L++ F++ +
Sbjct: 293 EADRLLDQSFQDWV 306
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 58.0 bits (134), Expect = 8e-10
Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 4/169 (2%)
Frame = +1
Query: 10 IQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTL-RETQVLVLSPTRELATQI 186
IQ+ +I I RD++A A +G+GKT + ILQ L + + ++++PTREL QI
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 187 --QKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRS 360
Q L+ G + + + E KL + GTP R+ I+ L
Sbjct: 132 YRQAEKLSFGTSLKI-IELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTG-LSFEK 189
Query: 361 IKMLVLDEADEMLNKGFKEQIYDVYRYLPPGTQV-VLISGTLPHEILEM 504
++ V+DEAD + GF EQ + L S T+P + E+
Sbjct: 190 VEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEEL 238
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 35.5 bits (78), Expect = 0.005
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 8/133 (6%)
Frame = +1
Query: 13 QQRSILPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLVLSPTRELATQIQK 192
Q +I + G VI + +GK+ + I ILQSL + T V PT+ LA +K
Sbjct: 316 QADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQSTAFFVF-PTKSLAQDQKK 374
Query: 193 VILALGDFM----NVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLR--- 351
++ + +M N++ G T L E + +++ P + I R
Sbjct: 375 SLIDILSYMPTLKNIRVDTFDGDTPL-ESRESIIRSANIIFTNPDMLHQTILPNANRWYY 433
Query: 352 -TRSIKMLVLDEA 387
+++K+ VLDEA
Sbjct: 434 FFKNLKLFVLDEA 446
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 32.3 bits (70), Expect = 0.045
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +1
Query: 283 YGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPGTQ 459
YGQ+ + P + + +L + +V D+ D+ ++ E + ++RYLPPG +
Sbjct: 467 YGQYDIRKDPHQNI-ALPDSMLSRFDLLFIVTDDIDDKKDRALSEHVLRMHRYLPPGVE 524
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 29.9 bits (64), Expect = 0.24
Identities = 38/159 (23%), Positives = 63/159 (39%)
Frame = +1
Query: 13 QQRSILPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLVLSPTRELATQIQK 192
Q SI I + V+ A + GKT ++ QSL R V+ SP + L+ Q +
Sbjct: 203 QAVSIACIERQESVLVSAHTSAGKTVVAEYAVAQSLRDKQR---VIYTSPIKALSNQKYR 259
Query: 193 VILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRVLRTRSIKML 372
+LA +F +V G + D L ++ M+ R R + +
Sbjct: 260 ELLA--EFGDV--GLMTGDVTINPDATCLVMTTEILR-------SMLYRGSEVMREVAWV 308
Query: 373 VLDEADEMLNKGFKEQIYDVYRYLPPGTQVVLISGTLPH 489
+ DE M +K + LP + V +S T+P+
Sbjct: 309 IFDEIHYMRDKERGVVWEETIILLPDKSHFVFLSATIPN 347
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 27.5 bits (58), Expect = 1.3
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 6/128 (4%)
Frame = +1
Query: 46 RDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLVLSPTRELATQIQKVILALGDFMNV 225
R + +G+GKTA F I + Q L+L +ELA Q K
Sbjct: 47 RRIAVSLATGSGKTALFPHFIKYAPTLRPNSEQCLILVHRKELALQALK----------- 95
Query: 226 QCHACIGGTNLGEDIRKLDYGQHVVSG----TPGRVFDMIRRRVLRTR--SIKMLVLDEA 387
C + ++ ++D G SG T VF + R+L+ + K+L+ DE
Sbjct: 96 HCRESLPNKSI-----EIDMGNQCASGLADVTVASVFSLKNERLLKYNPLNFKLLIFDEV 150
Query: 388 DEMLNKGF 411
M + +
Sbjct: 151 HHMASPSY 158
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 334 RRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLP 447
RR L+ I V +A + ++ G + D YRY P
Sbjct: 458 RRSALKFTDIDYFVFSDASKYVSIGMSPYMRDTYRYTP 495
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 16 QRSILPIVKGRD--VIAQAQSGTGKTATFSISILQSLDTTLRE 138
Q + PI G D ++ A +G GKT + IL L LRE
Sbjct: 524 QSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLRE 566
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 95 NVAVLPVPDCACAITSLPFTI 33
NV + P DC +T PFT+
Sbjct: 821 NVLLQPTTDCLVQLTDTPFTV 841
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +1
Query: 217 MNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIR 336
+++ H C+ N + ++ +Y + +G+PG+VFD++R
Sbjct: 458 VHLDVHWCMAVINKSK--KRFEYWDSL-AGSPGKVFDLLR 494
>SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 139
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 413 KNRYMMFTVIYPQEHRSF 466
K+RY++F V+YP+ F
Sbjct: 5 KSRYLLFEVLYPEAKEFF 22
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 233 WHCTFMKSPSASITFWIWVANSRVGDNTR 147
WH ++ F W+AN+ +G NTR
Sbjct: 1127 WHYRIYENCFLGSEFVSWLANTFIGINTR 1155
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 24.6 bits (51), Expect = 9.0
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = -2
Query: 371 NIFIDLVRNTRRLIISKTLPGVPET-TC*P*SNF--LMSS--PRFVPPIHAWHCTFMKSP 207
N+ IDL+RN + K VPE + SN L+S+ R PI AW P
Sbjct: 558 NMIIDLIRNDLHQLAKKNSVHVPELYSVEEHSNVYSLLSNIYGRIESPITAWDVLSKSFP 617
Query: 206 SASIT 192
S+T
Sbjct: 618 PGSMT 622
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 99 NFNLTIVGYDFA*NSGPSVISNTR 170
N+ L + GYDF NSG S S +
Sbjct: 265 NYPLRLQGYDFHANSGSSYTSRLK 288
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 230 HCTFMKSPSASITFWIWVANSR 165
HC +K S WIW+ +S+
Sbjct: 25 HCNAVKDASFDERTWIWIPDSK 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,206
Number of Sequences: 5004
Number of extensions: 47856
Number of successful extensions: 182
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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