Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M17
         (522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      107   9e-26
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   3.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   3.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  107 bits (256), Expect = 9e-26
 Identities = 65/182 (35%), Positives = 104/182 (57%), Gaps = 14/182 (7%)
 Frame = +1

Query: 16  QRSILPIV-KGRDVIAQAQSGTGKTATFSISILQSL---------DTTLRETQVLVLSPT 165
           Q+  LPI+  GRD++A AQ+G+GKTA F++ I+ +L          +T  E QV+++SPT
Sbjct: 223 QKHALPIIMNGRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPT 282

Query: 166 RELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDMIRRRV 345
           REL  QI + I+       ++     GGT++     KL  G H++  TPGR+ D + +  
Sbjct: 283 RELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGR 342

Query: 346 LRTRSIKMLVLDEADEMLNKGFK---EQIYDVYRYLPPG-TQVVLISGTLPHEILEMTSK 513
           ++  S++ LVLDEAD ML+ GF    E++ D    +P G  Q ++ S T P E+  +  +
Sbjct: 343 VKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFSATFPDEVQHLARR 402

Query: 514 FM 519
           F+
Sbjct: 403 FL 404


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = +3

Query: 183 DPKSDTRTWGFHERAMPCMYWWD 251
           +P   T   G H + +    WWD
Sbjct: 51  EPAQTTSKAGIHRKKVLLSVWWD 73


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = +3

Query: 183 DPKSDTRTWGFHERAMPCMYWWD 251
           +P   T   G H + +    WWD
Sbjct: 173 EPAQTTSKAGIHRKKVLLSVWWD 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,108
Number of Sequences: 438
Number of extensions: 3751
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)