Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M16
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    61   7e-11
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    54   1e-08
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    25   4.2  

>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 61.3 bits (142), Expect = 7e-11
 Identities = 29/56 (51%), Positives = 37/56 (66%)
 Frame = -1

Query: 180 YELPFDRHDWIVDRCGKEVRYVIDYYVGGEIDNKYQFALLDVRPALDNFDNAWDRM 13
           Y  PFDRHDW+V+RCG++V YVID+Y G  + N      LDVRP L +   AW R+
Sbjct: 150 YNKPFDRHDWLVNRCGRKVAYVIDFYNGPTV-NGTPSIYLDVRPKL-SVHGAWMRV 203


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 54.0 bits (124), Expect = 1e-08
 Identities = 31/58 (53%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
 Frame = -1

Query: 177 ELPFDRHDWIVDRCGKE-VRYVIDYYVGGE-IDNKYQFALLDVRPALDNFDNAWDRMK 10
           E PFDRHDW V R     VRYVIDYY   +  D K  F+L DVRPA+D+F++   R K
Sbjct: 310 EGPFDRHDWYVQRKDNSIVRYVIDYYEAPDSADGKPVFSL-DVRPAVDSFESVALRWK 366


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 352 EKFL*PLRVILGYGQNLYIPVIYNLLT 432
           EK L PL+ I GYG  ++ P+   +LT
Sbjct: 205 EKDLLPLQQIYGYGATVWSPLKSGILT 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,838,027
Number of Sequences: 5004
Number of extensions: 34915
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)