Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M16
         (456 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935...    27   9.5  
02_04_0532 + 23711530-23711755,23712984-23713093,23713204-237152...    27   9.5  

>07_03_1529 +
           27491963-27492465,27493045-27493154,27493384-27493510,
           27494082-27494430,27494975-27495251,27496236-27496333,
           27498090-27498214,27498270-27498326,27498328-27498370,
           27498581-27498667,27498802-27498882,27499735-27499901,
           27499987-27500098,27500188-27500390,27500473-27500607,
           27501106-27501205
          Length = 857

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 49  WSDIE*GKLVFVVNFSTDIII 111
           W   E  K +FVVNFST + +
Sbjct: 638 WGSKELSKFIFVVNFSTSLCV 658


>02_04_0532 +
           23711530-23711755,23712984-23713093,23713204-23715298,
           23716092-23716153,23716236-23716277,23716614-23716673,
           23716873-23717010,23717333-23717374,23717452-23717574
          Length = 965

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 125 YVMLLIIMSVEKLTTNTNLPYSMSDQHWIILTMHGTE*K 9
           Y+ML+  M V+   +   LP + +  HW +  ++G + K
Sbjct: 850 YIMLIKDMQVKVQESMIFLPLNRNSTHWYVAVLNGAKEK 888


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,735,487
Number of Sequences: 37544
Number of extensions: 184608
Number of successful extensions: 294
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)