Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M16
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49130-4|CAA88969.1|  280|Caenorhabditis elegans Hypothetical pr...    87   4e-18
U23525-10|AAC46571.2|  503|Caenorhabditis elegans Hypothetical p...    28   3.7  
U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AY305834-1|AAR11979.1|  327|Caenorhabditis elegans nuclear recep...    28   3.7  
AF083228-1|AAD03686.1|  415|Caenorhabditis elegans nuclear recep...    28   3.7  
AC006810-4|AAT68890.1|  425|Caenorhabditis elegans Nuclear hormo...    28   3.7  
AC006810-3|AAF59634.2|  414|Caenorhabditis elegans Nuclear hormo...    28   3.7  

>Z49130-4|CAA88969.1|  280|Caenorhabditis elegans Hypothetical
           protein T06D8.6 protein.
          Length = 280

 Score = 87.4 bits (207), Expect = 4e-18
 Identities = 38/58 (65%), Positives = 47/58 (81%), Gaps = 2/58 (3%)
 Frame = -1

Query: 180 YELPFDRHDWIVDRCG-KEVRYVIDYYVGGEID-NKYQFALLDVRPALDNFDNAWDRM 13
           Y+LPFDRHDWIVDRCG K+V+YVIDYY GG +D +   F +LDVRPA+++  N WDRM
Sbjct: 193 YDLPFDRHDWIVDRCGTKQVQYVIDYYDGGAVDPSSKLFTILDVRPAVNDIGNIWDRM 250


>U23525-10|AAC46571.2|  503|Caenorhabditis elegans Hypothetical
           protein K11G12.6a protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = -2

Query: 245 FNSFCIQYLNCLIK*IILIFSGMSYLSIVTIGS*TDAGR--KYVML-LIIMSVEKLTTNT 75
           F  F I Y++ ++  + +IF+ ++  S++ +GS +  GR  K+V L  ++ SV  L    
Sbjct: 201 FRKFMIYYIDVIVATMAIIFTIVNCYSMLKVGS-SQNGRMKKWVHLAFVLCSVLFLGVYG 259

Query: 74  NLPYSMSDQ 48
           N+P    D+
Sbjct: 260 NIPLLRMDE 268


>U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical
           protein K11G12.6b protein.
          Length = 766

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = -2

Query: 245 FNSFCIQYLNCLIK*IILIFSGMSYLSIVTIGS*TDAGR--KYVML-LIIMSVEKLTTNT 75
           F  F I Y++ ++  + +IF+ ++  S++ +GS +  GR  K+V L  ++ SV  L    
Sbjct: 464 FRKFMIYYIDVIVATMAIIFTIVNCYSMLKVGS-SQNGRMKKWVHLAFVLCSVLFLGVYG 522

Query: 74  NLPYSMSDQ 48
           N+P    D+
Sbjct: 523 NIPLLRMDE 531


>AY305834-1|AAR11979.1|  327|Caenorhabditis elegans nuclear receptor
           NHR-13 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 318 VYH*CYKRLLK*KVLIAVKSDSRIRAKLIHSRHLQSIDISRPYANV 455
           V+H  Y RL +    IA+   +R+   L H  HL S D+   + NV
Sbjct: 242 VWHVSYYRLSEDGRRIAIAQRNRLIRALHHVCHLDSDDVGERFGNV 287


>AF083228-1|AAD03686.1|  415|Caenorhabditis elegans nuclear receptor
           NHR-13 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 318 VYH*CYKRLLK*KVLIAVKSDSRIRAKLIHSRHLQSIDISRPYANV 455
           V+H  Y RL +    IA+   +R+   L H  HL S D+   + NV
Sbjct: 330 VWHVSYYRLSEDGRRIAIAQRNRLIRALHHVCHLDSDDVGERFGNV 375


>AC006810-4|AAT68890.1|  425|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 13, isoform b protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 318 VYH*CYKRLLK*KVLIAVKSDSRIRAKLIHSRHLQSIDISRPYANV 455
           V+H  Y RL +    IA+   +R+   L H  HL S D+   + NV
Sbjct: 329 VWHVSYYRLSEDGRRIAIAQRNRLIRALHHVCHLDSDDVGERFGNV 374


>AC006810-3|AAF59634.2|  414|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 13, isoform a protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 318 VYH*CYKRLLK*KVLIAVKSDSRIRAKLIHSRHLQSIDISRPYANV 455
           V+H  Y RL +    IA+   +R+   L H  HL S D+   + NV
Sbjct: 329 VWHVSYYRLSEDGRRIAIAQRNRLIRALHHVCHLDSDDVGERFGNV 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,928,491
Number of Sequences: 27780
Number of extensions: 190178
Number of successful extensions: 362
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)