Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M16
         (456 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    25   0.39 
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      25   0.39 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   6.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   6.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.4  

>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 25.0 bits (52), Expect = 0.39
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 335 ITLMVYIFI*VVFYIPDKCE 276
           IT++++ F+ ++  IP KCE
Sbjct: 12  ITVLLFSFVVILLIIPSKCE 31


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 25.0 bits (52), Expect = 0.39
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 335 ITLMVYIFI*VVFYIPDKCE 276
           IT++++ F+ ++  IP KCE
Sbjct: 12  ITVLLFSFVVILLIIPSKCE 31


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 144 DRCGKEVRYVIDYYVGGEID 85
           D C  +++++I++   GEID
Sbjct: 80  DVCFNDLKFIIEFVYRGEID 99


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 18  CPMHCQNYPM 47
           CPM+ +N+PM
Sbjct: 130 CPMNLENFPM 139


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +1

Query: 382 LGYGQNLYIPVIYNLLTS 435
           LGY  + + P+IY++  +
Sbjct: 313 LGYSNSAFNPIIYSIFNT 330


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 18  CPMHCQNYPM 47
           CPM  +N+PM
Sbjct: 162 CPMELRNFPM 171


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 125 YVMLLIIMSVEKLTTNTNLPYSMSDQHWIILTMHGT 18
           Y  LLI++S         +P + ++  +I  TM+ T
Sbjct: 680 YNALLILISTVYAVKTRKIPENFNESKFIGFTMYTT 715


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 358 FL*PLRVILGYGQNLYIPVIYNLL 429
           FL  L + LGY  +L  P+IY  L
Sbjct: 407 FLSSLFLWLGYCNSLLNPIIYATL 430


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 125 YVMLLIIMSVEKLTTNTNLPYSMSDQHWIILTMHGT 18
           Y  LLI++S         +P + ++  +I  TM+ T
Sbjct: 770 YNALLILISTVYAVKTRKIPENFNESKFIGFTMYTT 805


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,597
Number of Sequences: 438
Number of extensions: 2500
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)