Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_M14
(476 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 237 5e-64
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 234 6e-63
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 2.6
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 25 4.5
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo... 25 4.5
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 25 7.9
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 25 7.9
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 25 7.9
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 237 bits (581), Expect = 5e-64
Identities = 115/156 (73%), Positives = 128/156 (82%)
Frame = +2
Query: 8 GRFKGTVEAVDGHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVFTTTDKASAHLV 187
GRF+G+VE G LV++G I V +ERDP I W +GAEYV+ESTGVFTT + ASAHL
Sbjct: 54 GRFEGSVETKGGKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLK 113
Query: 188 GGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIEG 367
GGAK+VIISAPS DAPMFVVGVNLE ++PS KVISNASCTTNCLAPLAKVI+D F I EG
Sbjct: 114 GGAKRVIISAPSKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEG 173
Query: 368 LMTTVHATTGTQKTVDGPSGKLWRDGRGAQQNIIPA 475
LMTTVHATT TQKTVDGPS K WR GRGA NIIP+
Sbjct: 174 LMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPS 209
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 234 bits (572), Expect = 6e-63
Identities = 113/156 (72%), Positives = 127/156 (81%)
Frame = +2
Query: 8 GRFKGTVEAVDGHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVFTTTDKASAHLV 187
GRF G+VE DG LV++G I V +ERDP I W +GA+YV+ESTGVFTT + ASAHL
Sbjct: 54 GRFDGSVEIKDGKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLK 113
Query: 188 GGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIEG 367
GGAK+VIISAPS DAPM+VVGVN E ++PS KVISNASCTTNCLAPLAKVI+D F I EG
Sbjct: 114 GGAKRVIISAPSKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEG 173
Query: 368 LMTTVHATTGTQKTVDGPSGKLWRDGRGAQQNIIPA 475
LMTTVHATT TQKTVDGPS K WR GRGA NIIP+
Sbjct: 174 LMTTVHATTATQKTVDGPSKKDWRGGRGASANIIPS 209
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 2.6
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = +3
Query: 90 IPMLFHGVRLVLNTLLNQPVCSQPLIKLLLTWWVEPRK*SSPHQVLMLPCL*LVSTWKPT 269
+P ++ V L L +QP+ P+I L V P + PH + P +++ P
Sbjct: 161 VPSHWYPVSLPSPNLPHQPISKPPVIPNLPKLQVHPNR--LPHPIHNHPYS-SPTSYPPP 217
Query: 270 ILPTKLFQMLPAQL---TASHPSQRSS 341
+ P P QL TA PS +SS
Sbjct: 218 LCPATYCPSNPPQLAPATAIAPSSQSS 244
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -1
Query: 95 GDPSQRTQL--SSFRLRRGVHLRPQRY 21
G P++R L +F +RRGVHL+ +Y
Sbjct: 163 GIPTKRKDLFPCNFFIRRGVHLKVNKY 189
>SPBC4B4.06 |vps25||ESCRT II complex subunit
Vps25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.4 bits (53), Expect = 4.5
Identities = 5/16 (31%), Positives = 12/16 (75%)
Frame = +1
Query: 397 HPEDC*WTFWKTVARW 444
+P+D W +W++++ W
Sbjct: 91 NPKDVFWVYWRSISEW 106
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 7.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 166 ISGCEHTG*FNNVFSTSLTPWNSMGIPL 83
+S H+G F T L+PWN IPL
Sbjct: 445 VSSSRHSGIFAT--PTFLSPWNIKNIPL 470
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 24.6 bits (51), Expect = 7.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 124 STSLTPWNSMGIPLREHSYLLSVYDEVSI 38
S S +S +PLREH L +VY +V +
Sbjct: 50 SLSSVDVSSPSLPLREHLPLKNVYSQVPL 78
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 24.6 bits (51), Expect = 7.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 464 CFAEPHGHRATVFQKVHQQSSG 399
C A HGH+ T+ Q Q++ G
Sbjct: 240 CIATLHGHKNTIMQASFQKNFG 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,760
Number of Sequences: 5004
Number of extensions: 46112
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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