Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_M14
(476 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 248 2e-66
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 247 4e-66
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 214 4e-56
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 208 1e-54
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 197 4e-51
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 151 3e-37
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 142 2e-34
08_02_1628 + 28363476-28363517,28363624-28363791,28363863-283639... 29 1.5
01_06_0115 + 26585481-26586401,26586501-26586556,26586747-265868... 29 1.5
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755 29 2.6
07_03_1666 + 28482262-28482385,28482475-28482992 28 3.4
03_04_0110 - 17357323-17357403,17357487-17357595,17357737-173579... 28 4.5
06_03_0112 + 16781770-16782020,16782032-16782764 27 7.8
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 248 bits (607), Expect = 2e-66
Identities = 116/157 (73%), Positives = 133/157 (84%), Gaps = 1/157 (0%)
Frame = +2
Query: 8 GRFKGTVEAVDGH-LVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVFTTTDKASAHL 184
G FKG+++ VD L +NGKK+ + S+RDP IPWG GAEYVVES+GVFTTT+KASAHL
Sbjct: 189 GPFKGSIKVVDDSTLEINGKKVTITSKRDPADIPWGNFGAEYVVESSGVFTTTEKASAHL 248
Query: 185 VGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIE 364
GGAKKV+ISAPSADAPMFVVGVN ++YDP V+SNASCTTNCLAPLAKV+H+ F I+E
Sbjct: 249 KGGAKKVVISAPSADAPMFVVGVNEKSYDPKMNVVSNASCTTNCLAPLAKVVHEEFGIVE 308
Query: 365 GLMTTVHATTGTQKTVDGPSGKLWRDGRGAQQNIIPA 475
GLMTTVHATT TQKTVDGPS K WR GRGA QNIIP+
Sbjct: 309 GLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPS 345
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 247 bits (604), Expect = 4e-66
Identities = 117/157 (74%), Positives = 133/157 (84%), Gaps = 1/157 (0%)
Frame = +2
Query: 8 GRFKGTVEAVD-GHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVFTTTDKASAHL 184
G FKGT++ VD L +NGKKI+V S+RDP IPWG GAEYVVES+GVFTTT+KASAHL
Sbjct: 130 GPFKGTIKVVDESTLEINGKKISVTSKRDPSDIPWGNFGAEYVVESSGVFTTTEKASAHL 189
Query: 185 VGGAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIE 364
GGA+KV+ISAPSADAPMFVVGVN + Y+PS V+SNASCTTNCLAPLAK++H+ F I E
Sbjct: 190 KGGARKVVISAPSADAPMFVVGVNEKNYNPSMNVVSNASCTTNCLAPLAKIVHEEFGIAE 249
Query: 365 GLMTTVHATTGTQKTVDGPSGKLWRDGRGAQQNIIPA 475
GLMTTVHATT TQKTVDGPS K WR GRGA QNIIP+
Sbjct: 250 GLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPS 286
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 214 bits (522), Expect = 4e-56
Identities = 100/143 (69%), Positives = 114/143 (79%)
Frame = +2
Query: 47 LVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVFTTTDKASAHLVGGAKKVIISAPSA 226
L+ K++ VF R+P IPWG+ GAE+VVESTGVFT DKA+AHL GGAKKV+ISAPS
Sbjct: 117 LLFGEKEVTVFGCRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK 176
Query: 227 DAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIEGLMTTVHATTGTQK 406
DAPMFVVGVN + Y P ++SNASCTTNCLAPLAKVI+D F I+EGLMTTVHA T TQK
Sbjct: 177 DAPMFVVGVNEKEYKPDIDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQK 236
Query: 407 TVDGPSGKLWRDGRGAQQNIIPA 475
TVDGPS K WR GR A NIIP+
Sbjct: 237 TVDGPSSKDWRGGRAASFNIIPS 259
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 208 bits (509), Expect = 1e-54
Identities = 98/131 (74%), Positives = 107/131 (81%)
Frame = +2
Query: 83 ERDPHAIPWGQAGAEYVVESTGVFTTTDKASAHLVGGAKKVIISAPSADAPMFVVGVNLE 262
ER+P IPW +AGAEYVVESTGVFT +KA+AHL GGAKKV+ISAPS DAPMFV GVN +
Sbjct: 104 ERNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNED 163
Query: 263 AYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIEGLMTTVHATTGTQKTVDGPSGKLWRD 442
Y ++SNASCTTNCLAPLAKVIHDNF IIEGLMTTVHA T TQKTVDGPS K WR
Sbjct: 164 KYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRG 223
Query: 443 GRGAQQNIIPA 475
GR A NIIP+
Sbjct: 224 GRAASFNIIPS 234
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 197 bits (480), Expect = 4e-51
Identities = 101/157 (64%), Positives = 113/157 (71%), Gaps = 14/157 (8%)
Frame = +2
Query: 47 LVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVFTTTDKASAHLVG------------ 190
L+ K++AVF R+P IPW AGAEYVVESTGVFT DKA+AHL G
Sbjct: 74 LIFGTKEVAVFGCRNPEEIPWAAAGAEYVVESTGVFTDKDKAAAHLKGQAVDLFSIIFHM 133
Query: 191 --GAKKVIISAPSADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHDNFEIIE 364
GAKKV+ISAPS DAPMFVVGVN + Y ++SNASCTTNCLAPLAKVI+D F I+E
Sbjct: 134 QGGAKKVVISAPSKDAPMFVVGVNEKEYKSDVNIVSNASCTTNCLAPLAKVINDRFGIVE 193
Query: 365 GLMTTVHATTGTQKTVDGPSGKLWRDGRGAQQNIIPA 475
GLMTTVHA T TQKTVDGPS K WR GR A NIIP+
Sbjct: 194 GLMTTVHAITATQKTVDGPSMKDWRGGRAASFNIIPS 230
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 151 bits (366), Expect = 3e-37
Identities = 76/157 (48%), Positives = 98/157 (62%), Gaps = 2/157 (1%)
Frame = +2
Query: 8 GRFKGTVEAV-DGHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVFTTTDKASAHL 184
G F V+ V D + V+GK I V S+R+P +PWG+ G + V+E TGVF D A H+
Sbjct: 119 GIFDADVKPVGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGVFVDRDGAGKHI 178
Query: 185 VGGAKKVIISAPS-ADAPMFVVGVNLEAYDPSYKVISNASCTTNCLAPLAKVIHDNFEII 361
GAKKV+I+AP D P +VVGVN + Y P +ISNASCTTNCLAP K++ F II
Sbjct: 179 QAGAKKVLITAPGKGDIPTYVVGVNADQYSPDEPIISNASCTTNCLAPFVKILDQKFGII 238
Query: 362 EGLMTTVHATTGTQKTVDGPSGKLWRDGRGAQQNIIP 472
+G MTT H+ TG Q+ +D L R R A NI+P
Sbjct: 239 KGTMTTTHSYTGDQRLLDASHRDL-RRARAAALNIVP 274
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 142 bits (343), Expect = 2e-34
Identities = 75/159 (47%), Positives = 97/159 (61%), Gaps = 4/159 (2%)
Frame = +2
Query: 8 GRFKGTVEAVDGHLV-VNGKKIAVFSERDPHAIPWGQAGAEYVVESTGVFTTTDKASAHL 184
G FK V+ VD + V+GK I V S RDP +PW + G + V+E TGVF A H+
Sbjct: 129 GTFKADVKIVDDQTISVDGKLIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHI 188
Query: 185 VGGAKKVIISAPS--ADAPMFVVGVNLEAYDPSY-KVISNASCTTNCLAPLAKVIHDNFE 355
GAKKVII+AP+ AD P +V+GVN Y +ISNASCTTNCLAP K++ + F
Sbjct: 189 QAGAKKVIITAPAKGADIPTYVLGVNEGDYSHEVANIISNASCTTNCLAPFVKILDEEFG 248
Query: 356 IIEGLMTTVHATTGTQKTVDGPSGKLWRDGRGAQQNIIP 472
I++G MTT H+ TG Q+ +D L R R A NI+P
Sbjct: 249 IVKGTMTTTHSYTGDQRLLDASHRDL-RRARAAALNIVP 286
>08_02_1628 +
28363476-28363517,28363624-28363791,28363863-28363937,
28364018-28364070,28364559-28364709,28365079-28365261,
28366110-28366236,28366731-28366831,28367156-28367294,
28367359-28367420,28367702-28367754,28368266-28368290
Length = 392
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 264 ASRLTPTTNMGASALGAEMITFLAPPTK*AEALSVVVNTPV 142
+ L TT G + +GA + F++ P+K SVVVN V
Sbjct: 327 SEELIDTTGAGDAFIGAVLYAFVSGPSKFCSVKSVVVNLAV 367
>01_06_0115 + 26585481-26586401,26586501-26586556,26586747-26586876,
26587396-26587506,26587606-26587674,26588125-26588198,
26588446-26588581,26588702-26588795,26588901-26589000,
26589100-26589224,26589597-26589634,26589662-26589742,
26589868-26589972,26590102-26590166,26590371-26590572,
26591073-26591159,26591238-26591294,26591369-26591458,
26591572-26591658,26592204-26592278,26592363-26592463,
26592565-26592655
Length = 964
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 293 NASCTTNCLAPLAKVIHDNFEIIEGLMTTVHATTGTQKTVD 415
N SCT NC A + V HD I+ L+ + + G + T D
Sbjct: 899 NHSCTPNCYARIMSVGHDESRIV--LIAKKNVSAGEELTYD 937
>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
Length = 482
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 59 GKKIAVFSERDPHAIPWGQAGAEYVVESTGVFTTTDK 169
G K+ D + WG+ E + E G+ T+T+K
Sbjct: 445 GNKVDEMKSGDRQHLWWGKRNVEQITEKLGLLTSTEK 481
>07_03_1666 + 28482262-28482385,28482475-28482992
Length = 213
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -3
Query: 255 LTPTTNMGASALGAEMITFLAPPTK*AEALSVVVNTPVDSTTYSAPA*PHG--IAWGSLS 82
+T + MG+ G+ + + PP + S+ TT AP PHG I + +
Sbjct: 81 VTSSEMMGSLMSGSGRVAVITPPPAASGGASLPAAAAAGGTTLVAPVVPHGARILGATAA 140
Query: 81 ENT 73
+NT
Sbjct: 141 DNT 143
>03_04_0110 -
17357323-17357403,17357487-17357595,17357737-17357906,
17358503-17358649,17358767-17358925,17359410-17359469,
17359659-17359705,17359786-17359888,17362640-17363080
Length = 438
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = -3
Query: 453 APRPSRHSFPEGPSTVFWVPVVACTVVIKPSIISKLSWMT 334
AP H PEG V+W + P KL W+T
Sbjct: 152 APSSILHQVPEGHVGVYWRGGALLETITPPGFHVKLPWIT 191
>06_03_0112 + 16781770-16782020,16782032-16782764
Length = 327
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 176 QKLYQWL*THRLIQQRIQHQPDPME*HGDPSQRTQLS 66
Q +Y L RLIQ+++ H D ++ H + R QLS
Sbjct: 157 QGIYYALYIMRLIQRKLGHAGDNLKEHKEDKPRRQLS 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,764,041
Number of Sequences: 37544
Number of extensions: 332364
Number of successful extensions: 907
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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