Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M14
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   2.9  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   9.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -2

Query: 262 FQVDTNY--KHGSISTWCGDDYFLGSTHQVSRSFISGCEHTG*FNNVFSTSL 113
           FQV+ ++  K     +W GD + +    +VSR+  +G   T     V S S+
Sbjct: 691 FQVNQSHGIKRSGSHSWEGDSFKVSKHEEVSRTSTAGQFPTNVATTVTSMSI 742


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 56  NGKKIAVFSERDPHAIPWGQAGAEYVVESTG 148
           N KK+      +PH IP  Q  +E++ ++TG
Sbjct: 262 NFKKMQEEKIFEPHRIPQLQEVSEFLKKNTG 292


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 298 SI*NNFVGRIVGFQVDTNY 242
           S+ NN++  I  +  D NY
Sbjct: 84  SLSNNYISNISNYNNDNNY 102


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 399 VPVVACTVVIKPSIISK 349
           +P+ AC++  +P +I K
Sbjct: 444 IPISACSLPCEPGMIKK 460


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 399 VPVVACTVVIKPSIISK 349
           +P+ AC++  +P +I K
Sbjct: 534 IPISACSLPCEPGMIKK 550


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,489
Number of Sequences: 438
Number of extensions: 3058
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)