Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_M12
(416 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 33 0.013
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 30 0.17
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 28 0.51
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 27 0.88
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 0.88
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 27 0.88
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 27 1.2
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 27 1.5
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 27 1.5
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 27 1.5
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 27 1.5
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa... 26 2.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 3.6
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 25 3.6
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 25 3.6
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 25 3.6
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos... 25 4.7
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 25 4.7
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 6.2
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 25 6.2
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 24 8.2
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 24 8.2
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 33.5 bits (73), Expect = 0.013
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Frame = +2
Query: 119 LGKHTGENVEHK--GIKAHFNMD---DSGLLNLVN-VEFVAEKTVTEDEDKDSTLSKIGS 280
+ HTG + G+KA + + D G N +N +FV ++T+ E +++ S G
Sbjct: 626 INPHTGNIYSNNSPGVKALSSDNFKRDFGDTNAINRPKFVGQQTLEEFYASETSESSEGE 685
Query: 281 TISKLFGSDSETPDKADEKPDDTTQETKNKTQNPNETTTEKQNAT 415
++ T + DE+ DDT+QE N+ + + TE N +
Sbjct: 686 Y-------ETSTSESEDEETDDTSQEEDNEKNSTPDEDTENNNTS 723
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 29.9 bits (64), Expect = 0.17
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +2
Query: 218 VAEKTVTEDED-KD---STLSKIGSTISKLFGSDSETPDKADEKPDD 346
+ EK + ED D KD + +++LF D++TP+K++ PDD
Sbjct: 269 IYEKKLEEDADAKDIAPRAIVNFWRLLTELFRGDNDTPEKSNALPDD 315
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 28.3 bits (60), Expect = 0.51
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 230 TVTEDEDKDSTL-SKIGSTISKLFGSDSETPDKADEKPDDTTQETKNKTQNPNETTTEKQ 406
+++E+ KDSTL ++ L+ SD+E A E+ ++N+ P E+TT+
Sbjct: 209 SLSEESYKDSTLIMQLLRDNLTLWTSDAEYNQSAKEEAPAAAAASENEHPEPKESTTDTV 268
Query: 407 NA 412
A
Sbjct: 269 KA 270
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 27.5 bits (58), Expect = 0.88
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 224 EKTVTEDEDKDSTLSKIGSTISKLFGSDSETPDKADEKPDDTTQETKNKTQNPNETTTE 400
+K + + K T+S + + G+D + ++ DDT Q+T +N N T+E
Sbjct: 97 DKHINSEGSKSETISD-----TAISGNDDTMEKRLEQFSDDTLQDTLETEKNLNSKTSE 150
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 27.5 bits (58), Expect = 0.88
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +2
Query: 173 NMDDSGLLNLVNVEFVAEKTVTEDEDKDSTLSKIG--STISKLFGSDSETPDKADEKPDD 346
N D G+ L+N+ FV+ D++K L + ST S + D + +
Sbjct: 486 NNSDKGISELINIPFVSANNSMADDEKGRNLKNLTQISTSSTPAHDNLSLNDFFEPREAS 545
Query: 347 TTQETKNKT 373
T E+ N +
Sbjct: 546 TPSESSNSS 554
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 27.5 bits (58), Expect = 0.88
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +2
Query: 245 EDKDSTLSKIGSTISKLFGSDSETPDKADEKPDDTTQETKNKTQNPNETTTEKQNAT 415
E ++ ++I +T + E ++EKP E TQN + +T+ N T
Sbjct: 372 EVPENETNQIPTTEEHFPATTEEVAPASEEKPATGPAEESTSTQNVEQASTQNDNGT 428
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 27.1 bits (57), Expect = 1.2
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 197 NLVNVEFVAEKTVTEDEDKDSTLS---KIGSTISKLFGSDSETPDKADEK 337
NLV+V+ AE+T+ ++DK++ L ++ + L+ D E +A K
Sbjct: 52 NLVDVQEPAEETIPLEQDKENDLELELQLPDLLKALYSDDIEAQIQATAK 101
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 26.6 bits (56), Expect = 1.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 320 DKADEKPDDTTQETKNKTQNPNETTTEKQNA 412
+++DE+ D Q K Q+ E TTE +A
Sbjct: 239 ERSDEEESDNEQVNDEKKQSSEEDTTENNSA 269
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 26.6 bits (56), Expect = 1.5
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = -2
Query: 274 YFR-QGAVFIFVFRDSFFSDKLY 209
+FR Q + F+FV+R+SF SD Y
Sbjct: 208 FFRYQYSQFLFVYRESFLSDYYY 230
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 1.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 123 PNAVATPTNETLVRFKVP 70
PN + TP NET+ R K P
Sbjct: 126 PNIIPTPANETVPRIKQP 143
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 26.6 bits (56), Expect = 1.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 152 KGIKAHFNMDDSGLLNLVNVEFVAEKTVTEDED 250
K ++AHFN+D LLNL KT DED
Sbjct: 432 KLLQAHFNVDMPKLLNLTFELQHLRKTSKNDED 464
>SPBP19A11.01 |||glycine decarboxylase complex subunit
H|Schizosaccharomyces pombe|chr 2|||Manual
Length = 169
Score = 26.2 bits (55), Expect = 2.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 266 SKIGSTISKLFGSDSETPDKADEKPDDTTQETKNKTQNPNE 388
S + T++ + S ++PDK P++ K K +P+E
Sbjct: 108 SPVSGTVTSINESLGDSPDKVSSSPEEEGWICKIKLSSPDE 148
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.4 bits (53), Expect = 3.6
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +2
Query: 233 VTEDEDKDSTLSKIGSTISKLFGSDSETPDKADEKPDDTTQETKNKTQNPNE 388
V E+E K S ++ S P +EK DDT+ + T+N N+
Sbjct: 962 VGEEEVKQSVSEQVDSAQLTSEPKSESLPKSPEEKSDDTSNDV--TTENTND 1011
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 3.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 201 KLSKPESSILKCALMPLCSTFSP 133
K SK E++ILKC ++ L F+P
Sbjct: 415 KKSKLENNILKCVMIVLPKEFNP 437
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 3.6
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = +2
Query: 158 IKAHFNMDDSGLLNLVNVEFVAEKTVTEDEDKDSTLSKIGSTISKLFGSDSETPDKADEK 337
++ FN D L + + K + + S + + +++ P A+ +
Sbjct: 95 LEVEFNGGDWRLRKYPGQKHINGKPPSNSNSTEDASKPTSSDTASVKETENSDPKSAENE 154
Query: 338 --PDDTTQETKNKTQNPNETTTEKQ 406
+TTQ + NK +PN ++Q
Sbjct: 155 VLEGETTQHSNNKEAHPNTEENKEQ 179
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 3.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 351 LRKQKIKPKIRTKQQLRN 404
L +QKI P+I KQQ++N
Sbjct: 202 LEEQKIAPEIPVKQQIKN 219
>SPBC1347.06c |cki1||serine/threonine protein kinase
Cki1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 4.7
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +2
Query: 236 TEDEDKDSTLSKIGSTISKLFGSDSETPDKADEKPDDTTQETKNKTQNPNETT 394
TEDE+ D L G L ++ET ++ KP E+K+ + +T
Sbjct: 288 TEDENFDWNLLNNGKGWQSLKSRNAETENQRSSKPPAPKLESKSPALQNHAST 340
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 25.0 bits (52), Expect = 4.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 135 AKTSNIKALKHTSIWMIPVY 194
+K +KAL SIW+ P+Y
Sbjct: 43 SKVDYLKALNVESIWLCPIY 62
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 24.6 bits (51), Expect = 6.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 74 TLNLTKVSLVGVATALGKHTGENVEHKGIKAHFNMDDSGLLNLVNVE 214
+LN + L L K+ + ++ +GIK+ + S LLN + E
Sbjct: 1186 SLNADNLDLKDTNGVLEKNASDFIDFQGIKSRYEHKISDLLNQLQKE 1232
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 24.6 bits (51), Expect = 6.2
Identities = 24/105 (22%), Positives = 48/105 (45%)
Frame = +2
Query: 98 LVGVATALGKHTGENVEHKGIKAHFNMDDSGLLNLVNVEFVAEKTVTEDEDKDSTLSKIG 277
LVG + AL K T E+ K K+H +LN + +K+V+ S++S+
Sbjct: 109 LVGSSNALNKPTRESDSLKHQKSH------PMLNSLGSSLSLKKSVSR---PPSSMSRTN 159
Query: 278 STISKLFGSDSETPDKADEKPDDTTQETKNKTQNPNETTTEKQNA 412
+S + + ++ + D + D ++ T + ++ E + NA
Sbjct: 160 LDVSSRWDNTADNDSQIDAQ--DLSRSTPSPLRSAMENVLQSLNA 202
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/63 (20%), Positives = 29/63 (46%)
Frame = +2
Query: 221 AEKTVTEDEDKDSTLSKIGSTISKLFGSDSETPDKADEKPDDTTQETKNKTQNPNETTTE 400
+E+ +E+E S+ S+ S+ S+ E P K + ++ ++ ET +E
Sbjct: 38 SEEESSEEESASSSESESSEEESESEESEVEVPKKKAVAASEDSESDSESSEEEEETESE 97
Query: 401 KQN 409
+ +
Sbjct: 98 EDS 100
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 24.2 bits (50), Expect = 8.2
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +2
Query: 239 EDEDKDSTLSKIGSTISKLFGSDSETPDKADEKPDDTTQETKNK-TQNPNETTTEKQNA 412
E+ED + T S +DS + +EK Q TK+K + +E T K A
Sbjct: 13 EEEDTEFVPGDSTDTESSFSDADSSEEEFVEEKEASQVQSTKSKIATSESEDVTLKNIA 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,637,333
Number of Sequences: 5004
Number of extensions: 32034
Number of successful extensions: 140
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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