Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M11
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   7.1  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    24   7.1  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    24   9.4  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    24   9.4  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 166 SPSIRCKTVSKDYLDPFSVNYFRS 95
           S S   K    DY+DPF+++Y R+
Sbjct: 913 SGSFTLKDEYFDYVDPFNIHYSRN 936


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 345 LDSGCIVRDYW 377
           ++SGC+VR YW
Sbjct: 329 VNSGCLVRSYW 339


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 249 CSNRKXXXXXXXXXXXXXPACTSQRFRKH 335
           C NR              P+C +QRF++H
Sbjct: 149 CINRMTSIECTDEDNVCGPSCQNQRFQRH 177


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 381 WPSSHVQCTQNPKS 340
           WP+ H Q   NPKS
Sbjct: 282 WPTFHYQIPDNPKS 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,363,484
Number of Sequences: 5004
Number of extensions: 21847
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)