Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M11
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0070 + 18818127-18818404,18818492-18818532,18818691-188189...    26   8.9  
01_07_0382 + 43188478-43190919                                         26   8.9  

>11_05_0070 +
           18818127-18818404,18818492-18818532,18818691-18818990,
           18820005-18820757,18820840-18820889
          Length = 473

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 226 GVYANPEDAAIAKGKVKFDDQRVERCRRAHLNDLENIP 339
           GV   PED  + + +   DD   + C  A  N L++ P
Sbjct: 101 GVLLEPEDTYVGEDRFGLDDDNEQDCDGALDNSLDDEP 138


>01_07_0382 + 43188478-43190919
          Length = 813

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 320 LRCARRHLSTR*S-SNFTFPFAIAASSGLA 234
           L   RR L  R + +N+TFPFA+ A S LA
Sbjct: 110 LHLYRRMLRHRVAPNNYTFPFALKACSALA 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,477,368
Number of Sequences: 37544
Number of extensions: 133769
Number of successful extensions: 295
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)