Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M11
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040655-12|AAB95039.1|  507|Caenorhabditis elegans Hypothetical...    27   6.0  
Z74031-6|CAB54239.1|  227|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z74031-5|CAA98457.1|  225|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z70212-9|CAA94168.1|  491|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z50742-6|CAA90619.1|  491|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U39667-6|AAC69011.2|  640|Caenorhabditis elegans Disorganized mu...    26   7.9  
AY095447-1|AAM23316.1|  640|Caenorhabditis elegans DIM-1(L) prot...    26   7.9  

>AF040655-12|AAB95039.1|  507|Caenorhabditis elegans Hypothetical
           protein T24E12.1 protein.
          Length = 507

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 321 VEMCTPAPLNALIVKLHFPFCDCCIFWVSVHSTG 220
           +  CTP+ +N          C  C+FW +V S G
Sbjct: 290 INRCTPSLVNPAQFLRQTLCCSACVFWRAVCSYG 323


>Z74031-6|CAB54239.1|  227|Caenorhabditis elegans Hypothetical
           protein F32D8.5b protein.
          Length = 227

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 242 GLAYTPRVILAIDVKGANSSSLTASIAEYTM 150
           G   TP  ++A+ VKGA   SL++S+A   M
Sbjct: 62  GSQKTPHDVVAMGVKGAKILSLSSSLAGVVM 92


>Z74031-5|CAA98457.1|  225|Caenorhabditis elegans Hypothetical
           protein F32D8.5a protein.
          Length = 225

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 242 GLAYTPRVILAIDVKGANSSSLTASIAEYTM 150
           G   TP  ++A+ VKGA   SL++S+A   M
Sbjct: 60  GSQKTPHDVVAMGVKGAKILSLSSSLAGVVM 90


>Z70212-9|CAA94168.1|  491|Caenorhabditis elegans Hypothetical
           protein R04D3.1 protein.
          Length = 491

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -2

Query: 372 SHVQCTQNPKSGYVF*IVEMCTPAPLNALIVKLHFPFCDC 253
           + ++ T + K   +F  V++C    +N ++   HF + DC
Sbjct: 152 TQLEKTDDKKKADIFWPVQLCVGNVINQVLFGYHFKYDDC 191


>Z50742-6|CAA90619.1|  491|Caenorhabditis elegans Hypothetical
           protein R04D3.1 protein.
          Length = 491

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -2

Query: 372 SHVQCTQNPKSGYVF*IVEMCTPAPLNALIVKLHFPFCDC 253
           + ++ T + K   +F  V++C    +N ++   HF + DC
Sbjct: 152 TQLEKTDDKKKADIFWPVQLCVGNVINQVLFGYHFKYDDC 191


>U39667-6|AAC69011.2|  640|Caenorhabditis elegans Disorganized
           muscle protein 1,isoform a protein.
          Length = 640

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +3

Query: 3   TRLNLNQRSSFLEQIIHNSFVTSS*NTRLRRERK*FTENGSK*SFDTVLHRILGDTRCQA 182
           T ++ NQ+    E+  H+ +      TR   ++K   +NGS  S    L ++   T  + 
Sbjct: 73  TFISQNQQKGMTEKPKHSEYFLRLMKTRQEMQKKLTAKNGSNKSVQQYLRKLPPSTSKEV 132

Query: 183 TAI 191
           T I
Sbjct: 133 TII 135


>AY095447-1|AAM23316.1|  640|Caenorhabditis elegans DIM-1(L)
           protein.
          Length = 640

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +3

Query: 3   TRLNLNQRSSFLEQIIHNSFVTSS*NTRLRRERK*FTENGSK*SFDTVLHRILGDTRCQA 182
           T ++ NQ+    E+  H+ +      TR   ++K   +NGS  S    L ++   T  + 
Sbjct: 73  TFISQNQQKGMTEKPKHSEYFLRLMKTRQEMQKKLTAKNGSNKSVQQYLRKLPPSTSKEV 132

Query: 183 TAI 191
           T I
Sbjct: 133 TII 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,556,771
Number of Sequences: 27780
Number of extensions: 124897
Number of successful extensions: 284
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)