Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M10
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-11|AAF98632.1|  583|Caenorhabditis elegans Hypothetical...    27   6.7  
Z79599-1|CAB01871.4|  493|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z79597-3|CAB01862.4|  493|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z48230-4|CAO78721.1|  484|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z48230-3|CAA88263.1|  515|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z48006-7|CAO78729.1|  484|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z48006-6|CAA88051.1|  515|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U64860-1|AAB04991.1|  155|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AF039052-11|AAF98632.1|  583|Caenorhabditis elegans Hypothetical
           protein T22D1.11 protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 537 FIYIKLKVILLLQTHECYLLATCCVSAAPPVFHILLTALNNHC 409
           ++YI + +I L+    C +   CCV       +I L  L++ C
Sbjct: 536 YLYISMLIIALIFLTGCLVGKICCVQPRDRHLYIQLDGLDHDC 578


>Z79599-1|CAB01871.4|  493|Caenorhabditis elegans Hypothetical
           protein C33A11.4 protein.
          Length = 493

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 192 SNSCTKHTESNNTIYSILTCLPLLLHGI 109
           +NS    T S  TIY+ L C+P LL  I
Sbjct: 75  TNSANSLTTSTATIYNRLMCIPKLLQEI 102


>Z79597-3|CAB01862.4|  493|Caenorhabditis elegans Hypothetical
           protein C33A11.4 protein.
          Length = 493

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 192 SNSCTKHTESNNTIYSILTCLPLLLHGI 109
           +NS    T S  TIY+ L C+P LL  I
Sbjct: 75  TNSANSLTTSTATIYNRLMCIPKLLQEI 102


>Z48230-4|CAO78721.1|  484|Caenorhabditis elegans Hypothetical
           protein F19C6.4b protein.
          Length = 484

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 393 IYAKTYNDYLTQLRVCEIRAEPQTHSMLLINNIHVSVIAK 512
           ++AKT ++Y  +     I A P       +NN H++VI +
Sbjct: 274 LFAKTISEYDIRFLFQAIVANPANDGFQYLNNNHITVITR 313


>Z48230-3|CAA88263.1|  515|Caenorhabditis elegans Hypothetical
           protein F19C6.4a protein.
          Length = 515

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 393 IYAKTYNDYLTQLRVCEIRAEPQTHSMLLINNIHVSVIAK 512
           ++AKT ++Y  +     I A P       +NN H++VI +
Sbjct: 274 LFAKTISEYDIRFLFQAIVANPANDGFQYLNNNHITVITR 313


>Z48006-7|CAO78729.1|  484|Caenorhabditis elegans Hypothetical
           protein F19C6.4b protein.
          Length = 484

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 393 IYAKTYNDYLTQLRVCEIRAEPQTHSMLLINNIHVSVIAK 512
           ++AKT ++Y  +     I A P       +NN H++VI +
Sbjct: 274 LFAKTISEYDIRFLFQAIVANPANDGFQYLNNNHITVITR 313


>Z48006-6|CAA88051.1|  515|Caenorhabditis elegans Hypothetical
           protein F19C6.4a protein.
          Length = 515

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 393 IYAKTYNDYLTQLRVCEIRAEPQTHSMLLINNIHVSVIAK 512
           ++AKT ++Y  +     I A P       +NN H++VI +
Sbjct: 274 LFAKTISEYDIRFLFQAIVANPANDGFQYLNNNHITVITR 313


>U64860-1|AAB04991.1|  155|Caenorhabditis elegans Hypothetical
           protein R106.1 protein.
          Length = 155

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 159 YYFLCALCSYSNCTINYGT*WSIRIEVQVS 248
           Y FLC LCS+S  +++  + +  R+ V VS
Sbjct: 78  YTFLCLLCSHSPLSLHISSKFHTRLVVGVS 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,924,181
Number of Sequences: 27780
Number of extensions: 268239
Number of successful extensions: 589
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)