Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_M07
(504 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar... 64 9e-12
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 27 2.1
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 3.7
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 25 4.9
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 25 6.5
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 8.5
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 25 8.5
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.5
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 25 8.5
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 8.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 8.5
>SPAC222.11 |hem13||coproporphyrinogen III oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 312
Score = 64.5 bits (150), Expect = 9e-12
Identities = 32/61 (52%), Positives = 40/61 (65%)
Frame = +3
Query: 321 QMEMLIMRIQAEFCRALEKEEDKDAKFKVDRWLLKDGGGGISCVLQDGRVFEKAGVNISV 500
QME LI+ +Q E LE + + KF D+W +GG GISCV+QDG VFEK GVN S+
Sbjct: 12 QMEKLILDVQQEIVAGLEAVDGQ--KFFQDKWTKGEGGYGISCVIQDGNVFEKGGVNTSI 69
Query: 501 V 503
V
Sbjct: 70 V 70
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 26.6 bits (56), Expect = 2.1
Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 3/144 (2%)
Frame = +3
Query: 63 DFVSKMSFKVIVQSFRTLSYV---SAYKTIKDKPYKLYCAALIGTGYVAYTQHKHNKAQM 233
+F +K + + ++ R + + S +T+KD A I Y++ + +A +
Sbjct: 52 EFWTKFAHEYYIRGLREQAILILKSGLETLKDSESLCILNANIAAIYLSMAR----EAML 107
Query: 234 KEILQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQAEFCRALEKEEDKDAKFKVDR 413
K+ LR+ + E N+ D K+++ +L+ I +KE ++A D
Sbjct: 108 KKDTDLRDEQLRNVRTYLEAA-NNIDSKSEINVLLHGIYRILLNPTDKESLENAARCFD- 165
Query: 414 WLLKDGGGGISCVLQDGRVFEKAG 485
++L+ GG I L R+ G
Sbjct: 166 FVLQKSGGNILGFLGKARILYAKG 189
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 3.7
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +3
Query: 132 YKTIKDKPYKLYCAALIGTGYVAYTQHKHNKAQMKEILQLRNYMAEPITPATELEKNHHD 311
+ ++K + ++ + G +Y Q K KA + E+L + +P T A + E H+
Sbjct: 232 HSSLKKLSFLIFKVCIRLWGSQSYLQEK--KAGLAEVLNISTSQQKPKTTALDYEVFRHE 289
Query: 312 M 314
M
Sbjct: 290 M 290
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 234 KEILQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQ 350
+E++QL+N P K HD+K Q+E IQ
Sbjct: 587 EELMQLKNEETSINIPNETAVKEFHDLKLQLEKYGEEIQ 625
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 25.0 bits (52), Expect = 6.5
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 491 IHSCLLEHSSVLQYTTNTSTAIFK*PSVYLKFSILV--FFLLQRP 363
I LLE + L TNTS I + YL + +L FF LQ P
Sbjct: 125 ISRALLEQFAELASKTNTSHMIHQVYDQYLNYVVLESDFFSLQLP 169
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 8.5
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 51 SARGDFVSKMSFKVIVQSFRTLSYVSAYKTIKDKPYKLYCAALIGTGYVAYTQHKHNKA 227
S F S++ ++QS T I++K L AA TGYV+ T + N+A
Sbjct: 274 SQEAHFHSRIQSDTVIQSTPTKRKWDV--DIQNKQINLASAATNVTGYVSETDSRPNRA 330
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 24.6 bits (51), Expect = 8.5
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -1
Query: 219 YVCAGCRLHTQCRLKQRSITCMVYLLLFCKHSH 121
Y +G LH+ +K + +YL + C H H
Sbjct: 335 YSISGSTLHSFRSIKSHLVLSALYLYIGCFHMH 367
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 24.6 bits (51), Expect = 8.5
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -1
Query: 207 GCRLHTQCRLKQRSITC-MVYLLLFC-KHSHN*VS*NFAQLL*TTFLIQNHLVPNSCS 40
G L C+LK+ + ++ + C +H H V N + + + + NHL+P++ S
Sbjct: 112 GATLRFLCKLKEPELLDPLIPTVRQCLEHRHAYVRKNAILAVFSIYQVSNHLIPDAAS 169
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 24.6 bits (51), Expect = 8.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 276 TPATELEKNHHDMKAQMEMLIMRIQAEFCRALEKEEDKDAKFKVDRW 416
TPA EL+ + M ++ L+ + +L KEE A F+ D W
Sbjct: 590 TPAPELKGYYFGMSKAVQALVECVAGTDWSSLPKEEMYPALFR-DMW 635
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 213 KHNKAQMKEILQLRNYMAEPITPATELEKNHHDMKAQ 323
+H+ A+M+ LQL N +L++ H D Q
Sbjct: 781 EHSSARMERYLQLCNEDPREFPSEEKLQRQHQDCNIQ 817
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 24.6 bits (51), Expect = 8.5
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 210 HKHNKAQMKEILQLRNYMAEPITPATELEKNHH-DMKAQMEMLIMRIQAEFCRALEKEED 386
+K N ++ E L + ATE+ KN+ D+KAQ+E ++ + + +
Sbjct: 484 NKEN-TKLSEALSNHRVTRSEMEEATEILKNNSADLKAQLEKQPQELENRLLQEISILKQ 542
Query: 387 KDAKF 401
++ KF
Sbjct: 543 RNQKF 547
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 237 EILQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQ 350
E LQ A+ T + LEK H++++ E L+ ++Q
Sbjct: 1508 EHLQSEAVDADGKTEISNLEKEIHELRSDKEGLVQQVQ 1545
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,164,811
Number of Sequences: 5004
Number of extensions: 42474
Number of successful extensions: 105
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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