Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_M07
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1114 + 30995816-30996229,30997054-30997129,30997493-309975... 77 1e-14
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 30 0.92
08_01_0901 - 8873905-8874076,8874674-8874786,8875388-8875522,887... 30 1.2
03_02_0420 - 8298303-8299265,8299351-8299431,8299546-8299668,829... 30 1.2
04_01_0261 + 3516461-3516629,3517729-3517823,3518724-3518834,351... 29 2.1
02_02_0389 - 9617342-9617439,9617531-9617657,9619168-9619265,961... 29 2.1
12_01_0043 + 344084-344452,346672-347546,347635-348145 27 8.6
11_01_0044 + 340486-340854,341855-341911,343100-343974,344065-34... 27 8.6
05_04_0440 + 21266281-21266400,21267395-21267447,21267542-212676... 27 8.6
02_05_0838 - 32111373-32111879 27 8.6
01_06_1469 - 37578597-37578700,37578893-37579019,37579177-375792... 27 8.6
>04_04_1114 +
30995816-30996229,30997054-30997129,30997493-30997587,
30997729-30997812,30998094-30998181,30998485-30998609,
30998687-30998785,31000089-31000190,31001570-31001680
Length = 397
Score = 76.6 bits (180), Expect = 1e-14
Identities = 36/64 (56%), Positives = 45/64 (70%)
Frame = +3
Query: 312 MKAQMEMLIMRIQAEFCRALEKEEDKDAKFKVDRWLLKDGGGGISCVLQDGRVFEKAGVN 491
++ + E +I R+Q E C ALE+ + A+F D W GGGGIS VLQDGRVFEKAGVN
Sbjct: 35 VRERFEAMIRRVQGEVCAALEEADGSGARFVEDVWSRPGGGGGISRVLQDGRVFEKAGVN 94
Query: 492 ISVV 503
+SVV
Sbjct: 95 VSVV 98
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 30.3 bits (65), Expect = 0.92
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 496 DIFTPAFSNTLPSCSTQLIPPPP 428
D++ PAF + LP S L PPPP
Sbjct: 32 DMYMPAFLDQLPPSSHALYPPPP 54
>08_01_0901 -
8873905-8874076,8874674-8874786,8875388-8875522,
8875661-8875792,8876136-8876301,8877154-8877248,
8878983-8879104,8879283-8879403,8879556-8879633,
8879730-8879991,8880196-8880366,8881070-8881710
Length = 735
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 381 EDKDAKFKVDRWLLKDGGGG 440
ED++ ++ VDRWL ++ GGG
Sbjct: 168 EDEEVRWLVDRWLAEEDGGG 187
>03_02_0420 -
8298303-8299265,8299351-8299431,8299546-8299668,
8299815-8299983,8300108-8300478
Length = 568
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +3
Query: 228 QMKEILQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQAEFCRALEKEEDKDAKFKV 407
Q K+ Q RN AE E+++ HH+++ + + + R +E+ DA+
Sbjct: 221 QGKQNEQARNVRAEQFVEQNEVKREHHEVQGRQRFVDEEVNPILARLSVQEQYADARMAA 280
Query: 408 D 410
+
Sbjct: 281 E 281
>04_01_0261 +
3516461-3516629,3517729-3517823,3518724-3518834,
3519179-3519213,3519864-3519954,3520124-3520196,
3521127-3521257,3524325-3524720
Length = 366
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/69 (24%), Positives = 34/69 (49%)
Frame = +3
Query: 207 QHKHNKAQMKEILQLRNYMAEPITPATELEKNHHDMKAQMEMLIMRIQAEFCRALEKEED 386
Q+K Q KE+++ + E PA L K H ++ + E L + + + +++ED
Sbjct: 278 QNKELSKQNKELMEQSKELME--LPA--LRKKHEELTKRYESLTKKRNEDLAKLRKEKED 333
Query: 387 KDAKFKVDR 413
+ FK ++
Sbjct: 334 QQVDFKKEK 342
>02_02_0389 -
9617342-9617439,9617531-9617657,9619168-9619265,
9619341-9619508,9620883-9620992,9622449-9622501,
9622638-9622859
Length = 291
Score = 29.1 bits (62), Expect = 2.1
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -3
Query: 349 CILMMSISICAFISWWFF 296
C+++ I++ +I+WWFF
Sbjct: 92 CVILFPIAVTFYITWWFF 109
>12_01_0043 + 344084-344452,346672-347546,347635-348145
Length = 584
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 416 PSVYLKFSI---LVFFLLQRPTELGLYPHDEHFHL 321
PSVYL + LV L+ P L +PHD H H+
Sbjct: 185 PSVYLLLNAIVPLVVSLVALPAILLCHPHDGHLHV 219
>11_01_0044 +
340486-340854,341855-341911,343100-343974,344065-344398,
345553-345645,345913-346062
Length = 625
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 416 PSVYLKFSI---LVFFLLQRPTELGLYPHDEHFHL 321
PSVYL + LV L+ P L +PHD H H+
Sbjct: 204 PSVYLLLNAIVPLVVSLVALPAILLCHPHDGHLHV 238
>05_04_0440 +
21266281-21266400,21267395-21267447,21267542-21267651,
21268136-21268303,21268595-21268692,21269332-21269458,
21269587-21269693
Length = 260
Score = 27.1 bits (57), Expect = 8.6
Identities = 6/17 (35%), Positives = 13/17 (76%)
Frame = -3
Query: 349 CILMMSISICAFISWWF 299
C+++ +++ FI+WWF
Sbjct: 58 CVVLFPVAVTFFITWWF 74
>02_05_0838 - 32111373-32111879
Length = 168
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 411 RWLLKDGGGGISCVLQDGRVFEKAGVN 491
R L+ DGGG + C L G + + A +N
Sbjct: 67 RVLVVDGGGSVRCALLGGNLAQLAQIN 93
>01_06_1469 -
37578597-37578700,37578893-37579019,37579177-37579274,
37579373-37579540,37579872-37579981,37580072-37580124,
37581131-37581250
Length = 259
Score = 27.1 bits (57), Expect = 8.6
Identities = 6/17 (35%), Positives = 13/17 (76%)
Frame = -3
Query: 349 CILMMSISICAFISWWF 299
C+++ +++ FI+WWF
Sbjct: 58 CVVLFPVAVTFFITWWF 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,022,376
Number of Sequences: 37544
Number of extensions: 300932
Number of successful extensions: 794
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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