Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_M06
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 73 3e-14
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 46 3e-06
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 45 7e-06
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 45 7e-06
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 44 2e-05
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 37 0.002
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 36 0.003
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 34 0.013
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 33 0.023
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 33 0.041
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 33 0.041
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 32 0.071
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 31 0.16
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.50
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 28 0.88
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 0.88
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 28 1.2
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 27 2.0
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 4.7
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 26 4.7
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 25 6.2
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 25 6.2
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 25 8.2
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 25 8.2
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 72.9 bits (171), Expect = 3e-14
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = +3
Query: 441 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVP 542
M TIKCVVVGDGAVGKTCLLISYTTNKFPS+YVP
Sbjct: 1 MPTIKCVVVGDGAVGKTCLLISYTTNKFPSDYVP 34
Score = 35.1 bits (77), Expect = 0.008
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +1
Query: 487 KHAYLLAIQPTNFHQSMCQTVFDNYAVTVMIGGE 588
K L++ F TVFDNYAVTVMIG E
Sbjct: 16 KTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDE 49
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 46.4 bits (105), Expect = 3e-06
Identities = 22/37 (59%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = +3
Query: 435 SKMQTIK-CVVVGDGAVGKTCLLISYTTNKFPSEYVP 542
SK +T K VVVGDG GKTCLLI +++ FP YVP
Sbjct: 9 SKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVP 45
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 45.2 bits (102), Expect = 7e-06
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +3
Query: 453 KCVVVGDGAVGKTCLLISYTTNKFPSEYVP 542
K V+VGDGA GKTCLLI ++ FP YVP
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVP 37
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 45.2 bits (102), Expect = 7e-06
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +3
Query: 453 KCVVVGDGAVGKTCLLISYTTNKFPSEYVP 542
K V+VGDGA GKTCLLI ++ FP YVP
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVP 37
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 43.6 bits (98), Expect = 2e-05
Identities = 20/30 (66%), Positives = 22/30 (73%)
Frame = +3
Query: 453 KCVVVGDGAVGKTCLLISYTTNKFPSEYVP 542
K VVVGDGA GKT LL +T FP+EYVP
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVP 39
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 450 IKCVVVGDGAVGKTCLLISYTTNKFPSEY 536
+K V++GD VGKTCL+ + KF EY
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREY 37
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 36.3 bits (80), Expect = 0.003
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 453 KCVVVGDGAVGKTCLLISYTTNKFPSEYVP 542
K V++GDGA GKT LL +T FP Y P
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEP 44
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 34.3 bits (75), Expect = 0.013
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 441 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVP 542
++ K VVVGDG VGK+ L I + F EY P
Sbjct: 6 LREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDP 39
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 33.5 bits (73), Expect = 0.023
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +3
Query: 450 IKCVVVGDGAVGKTCLLISYTTNKFPSEYV 539
IK +++GD VGK+CLL+ ++ + F ++
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFI 39
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 32.7 bits (71), Expect = 0.041
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 447 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYV 539
T K V+VGDG GKT + + T +F +Y+
Sbjct: 9 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYI 39
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 32.7 bits (71), Expect = 0.041
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 447 TIKCVVVGDGAVGKTCLLISYTTNKFPSE 533
TIK ++GD ++GKT L+++Y F E
Sbjct: 10 TIKVGMIGDSSIGKTSLMVTYVQGSFDEE 38
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 31.9 bits (69), Expect = 0.071
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 453 KCVVVGDGAVGKTCLLISYTTNKFPSEYV 539
K +++GD VGK+CLL+ + + + Y+
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYI 38
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 30.7 bits (66), Expect = 0.16
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 453 KCVVVGDGAVGKTCLLISYTTNKFPSE 533
K V++GD VGK+ LL+ +T N+F E
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIE 38
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.1 bits (62), Expect = 0.50
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 456 CVVVGDGAVGKTCLL 500
C++VGD A GKTC+L
Sbjct: 1872 CILVGDTATGKTCIL 1886
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 28.3 bits (60), Expect = 0.88
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 453 KCVVVGDGAVGKTCLLISYTTNKFPSEYVP 542
+ V+G +VGK+ L + Y N F Y P
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYP 37
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 28.3 bits (60), Expect = 0.88
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 456 CVVVGDGAVGKTCLLISYTTNKFPSEYVPNSV 551
C VVG + GKT LL S+ N + PN+V
Sbjct: 424 CFVVGSKSCGKTALLSSFINNN-TNRLTPNTV 454
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 49 FNFYSQVLYCFIFTIYFREDS 111
+NF+S V YCF+ + F E S
Sbjct: 72 WNFFSVVTYCFVLFLQFAEQS 92
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 453 KCVVVGDGAVGKTCLLISYTTNKF 524
K V++GD AVGK+ L++ + ++F
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQF 39
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +2
Query: 95 ILERTPATFTRLSSCLVGR---LPMLHLPVRGSHSRTH 199
IL+R A +RL + LP +H P R S+S+TH
Sbjct: 17 ILKRLEAATSRLEDLVESGHKPLPNMHRPSRDSNSQTH 54
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -2
Query: 366 HSNLGREQAQKAMERAMLEVSLCDRIRNEEISRRTKVTDNARRIAKLK 223
H + + + A E+AML V LC +I + S ++D R + ++
Sbjct: 309 HGTMLQNRIAYAFEQAMLYVPLCPQIWLDGFSYFLSISDEQRALQTIR 356
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 450 IKCVVVGDGAVGKTCLLISYTTNKFPSE 533
+K V+ G GK+CLL + N++ +
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQ 37
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +2
Query: 311 SSIALSIAFWACSLPRLLWSASCVKQQEITSK 406
SS +++A + +LP ++ +SC + ++I SK
Sbjct: 291 SSAKINLAIESFTLPTRVYGSSCYRMKDIESK 322
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 8.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 338 KRQWRGLCSKFLCVIESEM 282
KR WR L KF C ++ ++
Sbjct: 33 KRNWRSLAKKFSCKLDRDI 51
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 106 DSCDLHQVVVLPCGAPAYAASSSTWQPF 189
DS L + V CG P + S +QPF
Sbjct: 21 DSSILSKASVEKCGYPGFTVGHSYYQPF 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,871
Number of Sequences: 5004
Number of extensions: 53568
Number of successful extensions: 146
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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