Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M06
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   0.96 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.2  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   2.9  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.9  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   3.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   3.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   3.9  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   5.1  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   5.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   5.1  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   6.8  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    21   6.8  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    21   6.8  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    21   6.8  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    21   6.8  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    21   6.8  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    21   6.8  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    21   6.8  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   6.8  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   6.8  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 434 VEDADN*VCCGRRWCG 481
           V+DAD   CCG RW G
Sbjct: 82  VQDAD--FCCGMRWPG 95


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 102 RGLLRPSPGCRPALWGACLCCIFQYVAAIREP 197
           R LL P     PA++   + CI  ++ AI  P
Sbjct: 310 RELLTPVSTMLPAVFAKTVSCIDPWIYAINHP 341


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 102 RGLLRPSPGCRPALWGACLCCIFQYVAAIREP 197
           R LL P     PA++   + CI  ++ AI  P
Sbjct: 310 RELLTPVSTMLPAVFAKTVSCIDPWIYAINHP 341


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 363 YGQQVVSNSKKLHLNICYIE 422
           Y     +N KKL+ NI YIE
Sbjct: 96  YNNNNYNNYKKLYYNINYIE 115


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 363 YGQQVVSNSKKLHLNICYIE 422
           Y     +N KKL+ NI YIE
Sbjct: 106 YNNNNYNNYKKLYYNINYIE 125


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 363 YGQQVVSNSKKLHLNICYIE 422
           Y     +N KKL+ NI YIE
Sbjct: 340 YNNNYNNNYKKLYYNINYIE 359


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 363 YGQQVVSNSKKLHLNICYIE 422
           Y +   +N KKL+ NI YIE
Sbjct: 96  YKKLYCNNYKKLYYNINYIE 115


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 363 YGQQVVSNSKKLHLNICYIE 422
           Y +   +N KKL+ NI YIE
Sbjct: 96  YKKLYCNNYKKLYYNINYIE 115


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 384 NSKKLHLNICYIE 422
           N+KKL+ NI YIE
Sbjct: 322 NNKKLYYNINYIE 334


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 381 SNSKKLHLNICYIE 422
           +N KKL+ NI YIE
Sbjct: 102 NNCKKLYYNINYIE 115


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 381 SNSKKLHLNICYIE 422
           +N KKL+ NI YIE
Sbjct: 107 NNCKKLYYNINYIE 120


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 381 SNSKKLHLNICYIE 422
           +N KKL+ NI YIE
Sbjct: 107 NNCKKLYYNINYIE 120


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 381 SNSKKLHLNICYIE 422
           +N KKL+ NI YIE
Sbjct: 107 NNCKKLYYNINYIE 120


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 381 SNSKKLHLNICYIE 422
           +N KKL+ NI YIE
Sbjct: 107 NNCKKLYYNINYIE 120


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 326 SIAFWACSLPRLLWSASCVKQQEIT 400
           S+AF A  L +LL    C K++E++
Sbjct: 64  SLAFGAIQLRQLLKRQLCEKRKEVS 88


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 422 ELLLVEDADN*VCCG 466
           ++++VED D+  CCG
Sbjct: 189 KVVVVEDVDSVECCG 203


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 381 SNSKKLHLNICYIE 422
           +N KKL+ NI YIE
Sbjct: 104 NNYKKLYYNINYIE 117


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 381 SNSKKLHLNICYIE 422
           +N KKL+ NI YIE
Sbjct: 104 NNYKKLYYNINYIE 117


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 381 SNSKKLHLNICYIE 422
           +N KKL+ NI YIE
Sbjct: 104 NNYKKLYYNINYIE 117


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 381 SNSKKLHLNICYIE 422
           +N KKL+ NI YIE
Sbjct: 104 NNYKKLYYNINYIE 117


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 381 SNSKKLHLNICYIE 422
           +N KKL+ NI YIE
Sbjct: 104 NNYKKLYYNINYIE 117


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 381 SNSKKLHLNICYIE 422
           +N KKL+ NI YIE
Sbjct: 104 NNYKKLYYNINYIE 117


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 381 SNSKKLHLNICYIE 422
           +N KKL+ NI YIE
Sbjct: 104 NNYKKLYYNINYIE 117


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 381 SNSKKLHLNICYIE 422
           +N KKL+ NI YIE
Sbjct: 104 NNYKKLYYNINYIE 117


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 381 SNSKKLHLNICYIE 422
           +N KKL+ NI YIE
Sbjct: 321 NNYKKLYYNINYIE 334


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 381 SNSKKLHLNICYIE 422
           +N K LH NI YIE
Sbjct: 329 NNYKPLHYNINYIE 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,386
Number of Sequences: 438
Number of extensions: 3930
Number of successful extensions: 31
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)