Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_M05
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 30 0.80
05_06_0259 + 26733699-26733854,26733940-26734071,26734171-267343... 28 2.4
07_01_1036 + 9021395-9021658,9024214-9024690 28 3.2
04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072 28 3.2
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22... 27 4.3
03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435 27 4.3
07_01_0180 + 1266975-1267550 27 5.6
01_06_1608 - 38612754-38616947,38617030-38617095 27 5.6
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 26 9.9
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 29.9 bits (64), Expect = 0.80
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 24 FQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQARISVV 164
F +MF M + VF +DV A L+QFMY GE+ V I+ V
Sbjct: 377 FDKMFTNGMKESSASNVFFEDVPVEAFFLLIQFMYSGELKVDIEEITPV 425
>05_06_0259 +
26733699-26733854,26733940-26734071,26734171-26734341,
26734419-26734445,26734550-26734757,26735160-26735241,
26735384-26735492,26735640-26735756,26735828-26736160
Length = 444
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 332 EGLVSKSVSNLVITDCLCCDDLGPGLDVGFGLDGVELSSF 213
EG+V K+VSN +I D CD P + ++L +F
Sbjct: 307 EGIVMKNVSNPIIIDQYYCDQPTPCANQSTSSSSLKLGNF 346
>07_01_1036 + 9021395-9021658,9024214-9024690
Length = 246
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 15 SPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGE 131
SP F+ M + M ++ I+ + DVS+ LR + +MY E
Sbjct: 92 SPVFRAMLENEMEESRSGIIKIYDVSYDVLRAFVHYMYTAE 132
>04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072
Length = 414
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 12 CSPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVN 137
C P + F T++P+VFL+ + + DLLQ + V+
Sbjct: 253 CEPRKEIFFTERNTENPLVFLRFLVSTPWGDLLQIKFSRRVH 294
>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
225296-225356,225666-226918
Length = 1891
Score = 27.5 bits (58), Expect = 4.3
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -3
Query: 377 AIDGLFGRLTATGVEEGLVSKSVSNLVITDCLCCDDLGPGL--DVGFGLDGVEL 222
AIDG L+ +G V K+ NLVI+ + C D+ + D+ G DGV L
Sbjct: 885 AIDGGKDSLSMAAQCDGEVVKAPGNLVISAYVTCPDITLTVTPDLKLGKDGVLL 938
>03_05_0743 - 27317823-27317969,27318027-27319997,27320335-27321435
Length = 1072
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -3
Query: 374 IDGLFGRLTATGVEEGLVSKSVSNLVITDCLCCDDLGPGL 255
I G FG + +S+ LV+ D CCD L GL
Sbjct: 797 IAGYFGHRLPQWMATATAFRSLRRLVLEDYACCDRLPGGL 836
>07_01_0180 + 1266975-1267550
Length = 191
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = -3
Query: 272 DLG-PGLDVGFGLDGVELSSF 213
D G P +DVGFGL GV+ ++F
Sbjct: 4 DFGLPDMDVGFGLFGVDAAAF 24
>01_06_1608 - 38612754-38616947,38617030-38617095
Length = 1419
Score = 27.1 bits (57), Expect = 5.6
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -3
Query: 377 AIDGLFGRLTATGVEEGLVSKSVSNLVITDCLCCDDLGPGL--DVGFGLDGVEL 222
AIDG L+ +G V K+ NLVI+ + C D+ + D+ G DGV L
Sbjct: 889 AIDGGKDSLSMAAQCDGEVVKAPGNLVISAYVTCPDITLTVTPDLKLGNDGVLL 942
>10_08_0829 -
20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 26.2 bits (55), Expect = 9.9
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +3
Query: 72 LKDVSHSALRDLLQFMYQGEVNVKQARISVVYSYRGTTSSERFNRESK*RKFHAIQTKAD 251
L +HS + L YQ E + A +S SY G ++++R N + T+
Sbjct: 166 LNRTTHSLSGNDLGGSYQDEAGNRDASLSASRSYSGDSTTDRTNMPPSDNLNDELNTQRH 225
Query: 252 VEAWPEVVTAKA 287
A P+ + A
Sbjct: 226 NFASPDAIHVSA 237
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,057,481
Number of Sequences: 37544
Number of extensions: 119873
Number of successful extensions: 319
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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