Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M05
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70780-13|CAD18872.2|  368|Caenorhabditis elegans Hypothetical p...    29   1.3  
AL032663-3|CAA21761.1|  320|Caenorhabditis elegans Hypothetical ...    29   1.3  
Z82059-10|CAB04878.2|  589|Caenorhabditis elegans Hypothetical p...    29   1.7  
AF067219-16|AAC17022.1|  531|Caenorhabditis elegans Hypothetical...    29   1.7  
L14433-2|AAA27978.1|  410|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    27   6.8  
Z68216-4|CAA92463.2|  565|Caenorhabditis elegans Hypothetical pr...    26   9.0  
U10402-5|AAA19066.2|  650|Caenorhabditis elegans Tryptophanyl (w...    26   9.0  
AF519108-1|AAM74222.1|  909|Caenorhabditis elegans EOR-1 protein.      26   9.0  
AF502568-1|AAM74151.1|  909|Caenorhabditis elegans EOR-1 protein.      26   9.0  
AF101315-5|AAM34816.1|  457|Caenorhabditis elegans Hypothetical ...    26   9.0  
AF100669-8|AAK39268.1|  909|Caenorhabditis elegans Egl-1 suppres...    26   9.0  

>Z70780-13|CAD18872.2|  368|Caenorhabditis elegans Hypothetical
           protein F46B6.3b protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 289 SVMTKLETDLDTKPSSTPVAVKRPNR 366
           SV TKL  + DT+P + P + K P R
Sbjct: 327 SVTTKLNKETDTRPRTAPSSTKLPTR 352


>AL032663-3|CAA21761.1|  320|Caenorhabditis elegans Hypothetical
           protein Y75B12B.4 protein.
          Length = 320

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 15  SPYFQEMFKMNPTQHPIVFLK--DVSHSALRDLLQFMYQGEVNVKQARIS 158
           S +FQ+MF  N  +     +K  DV+HS   DLL  +Y   + +  + +S
Sbjct: 182 SQFFQKMFYSNFAEKTQAEIKIDDVTHSEFIDLLNVIYPTHMLINSSNVS 231


>Z82059-10|CAB04878.2|  589|Caenorhabditis elegans Hypothetical
           protein T27E9.4a protein.
          Length = 589

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/51 (23%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +3

Query: 18  PYFQEMFKMNPTQHPI--VFLKDVSHSALRDLLQFMYQGEVNVKQARISVV 164
           PYF+ MF ++  +  +  + ++D+++  +  LL F Y GE+ +  + +  +
Sbjct: 74  PYFRGMFTLDLMEANMKEINIEDMNYETVDALLSFAYTGELRITTSNVQSI 124


>AF067219-16|AAC17022.1|  531|Caenorhabditis elegans Hypothetical
           protein R12E2.1 protein.
          Length = 531

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 12  CSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQARI 155
           CSPYF  MF  +M       + ++++    L  L++F Y G + +  + +
Sbjct: 77  CSPYFLSMFTSQMAECYMREINMEEIEPPTLEALIEFCYTGAIAIDDSNV 126


>L14433-2|AAA27978.1|  410|Caenorhabditis elegans Hypothetical
           protein C50C3.8 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 15  SPYFQEMFK---MNPTQHPIVFLKDVSHSALRDLLQFMYQG 128
           SP F+ MF    M   Q   + ++D  + ++R +++FMY G
Sbjct: 241 SPVFKSMFSSPNMIEAQKGEIHIEDAKYDSVRAMVEFMYTG 281


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 231  AIQTKADVEAWPEVVTAKAI 290
            +I+TK  +E WPEVV  K I
Sbjct: 2870 SIRTKEVLERWPEVVALKTI 2889


>Z68216-4|CAA92463.2|  565|Caenorhabditis elegans Hypothetical
           protein F27C8.5 protein.
          Length = 565

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +3

Query: 15  SPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQARIS---VVYSYRGTT 185
           S  F E F      +    + D    ++R +  +MY GE+++ +  I+    V SY   T
Sbjct: 57  SDVFSETFDNQRAPYQPFNMTDFDPDSVRRVFDWMYSGEIDIPETTIADVLAVASYLRVT 116

Query: 186 SSER 197
             +R
Sbjct: 117 MLQR 120


>U10402-5|AAA19066.2|  650|Caenorhabditis elegans Tryptophanyl (w)
           trna synthetaseprotein 2, isoform a protein.
          Length = 650

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +3

Query: 63  IVFLKDVSHSALRDLLQFMYQGEVNVKQARISVVYSYRGTTSSERFNRESK*RK 224
           I FL   +HS +  L  + + G + + Q  +S+  S       E+FN + K  K
Sbjct: 179 IRFLSASAHSDIPALKVYRFLGYITLIQLAVSIGISLYSFLEQEKFNNKLKKEK 232


>AF519108-1|AAM74222.1|  909|Caenorhabditis elegans EOR-1 protein.
          Length = 909

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 15  SPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQARIS 158
           SPYF  +FK        + +   S       L +MY G V + ++ +S
Sbjct: 64  SPYFDAIFKYCKITKEQLTINSKSPQVFELFLNYMYSGTVIIDRSSVS 111


>AF502568-1|AAM74151.1|  909|Caenorhabditis elegans EOR-1 protein.
          Length = 909

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 15  SPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQARIS 158
           SPYF  +FK        + +   S       L +MY G V + ++ +S
Sbjct: 64  SPYFDAIFKYCKITKEQLTINSKSPQVFELFLNYMYSGTVIIDRSSVS 111


>AF101315-5|AAM34816.1|  457|Caenorhabditis elegans Hypothetical
           protein T22H9.1 protein.
          Length = 457

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 144 QARISVVYSYRGTTSSERFNRESK*RKFHAIQTKADVEAWPEVVTA 281
           ++ I +V + R  T  E+   E K RKF+A+    DVE   E   A
Sbjct: 137 ESEIPLVNTGRKATGKEKNPAEKKSRKFNALGEFEDVEEDAEAAPA 182


>AF100669-8|AAK39268.1|  909|Caenorhabditis elegans Egl-1
           suppressor/dio uptake defective/raf enhancer protein 1
           protein.
          Length = 909

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 15  SPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQARIS 158
           SPYF  +FK        + +   S       L +MY G V + ++ +S
Sbjct: 64  SPYFDAIFKYCKITKEQLTINSKSPQVFELFLNYMYSGTVIIDRSSVS 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,182,395
Number of Sequences: 27780
Number of extensions: 110747
Number of successful extensions: 293
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)