Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M04
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   2.9  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   3.8  
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr...    25   6.7  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    25   8.9  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   8.9  

>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 4   RGFIVKTRQRRYFLMAPSGEAARIWIDVIFTGAQ-WLH 114
           +G +++T +RR  L  P G +   +I  ++ G Q WLH
Sbjct: 250 KGDVMQTEKRRLRLTEPDGHSG-TYISEVWLGLQAWLH 286


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 392 DAHNNHKRETRNKSEMRAQAFRLGRKYGSSSGPGILNRVA 273
           D H NH+ +  N  +  +++ +   K G SS  G  +R++
Sbjct: 398 DGHRNHEAKHGNTVQNESKSQKSSNKEGRSSRGGFFSRLS 437


>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 338 ELSFLIYSEFLFYDYCGRL 394
           ELS+     FL+  YCG+L
Sbjct: 78  ELSYAALPRFLYLSYCGKL 96


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 232 MTSTESKN*NRVREC-RLIWPLKAKGRSGLEDSDRSLEVVGVATGHL 95
           +T TE+   +R+++  RLI P+K       EDS RS   V  AT  L
Sbjct: 435 LTETETLMRSRLKQIFRLIDPVKTMQFQQAEDSIRSKSTVTSATSLL 481


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 428 FLST**SRYVLFDSDGS*IQRNLEYSYAI 514
           FL+     YVLF  DG  + + L+++YA+
Sbjct: 166 FLTYAEKNYVLFKRDGQFVLQALDHNYAV 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,663
Number of Sequences: 5004
Number of extensions: 39909
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)