Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M04
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0335 + 3695427-3695483,3695564-3695945,3696191-3696258           29   2.2  
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995...    27   6.8  
11_01_0013 - 103484-103493,103787-103897,104279-104781,105119-10...    27   6.8  

>10_01_0335 + 3695427-3695483,3695564-3695945,3696191-3696258
          Length = 168

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 75  LDRRHFHRCPVATP-TTSSERSLSSNPERPL 164
           L+R+   RCPV TP TTSS+++ S +P   L
Sbjct: 94  LNRQCLIRCPVKTPSTTSSDKNRSLSPSDQL 124


>12_01_0013 -
           99290-99299,99593-99703,100085-100587,100925-100995,
           101413-101491,102336-102956
          Length = 464

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 23  RVSGDTSSWRPRVKRHAFGSTSFS 94
           R S   S W   VKR  F STSFS
Sbjct: 192 RHSNSDSDWLEAVKREPFNSTSFS 215


>11_01_0013 -
           103484-103493,103787-103897,104279-104781,105119-105189,
           105607-105685,106530-107153
          Length = 465

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 23  RVSGDTSSWRPRVKRHAFGSTSFS 94
           R S   S W   VKR  F STSFS
Sbjct: 193 RHSNSDSDWLEAVKREPFNSTSFS 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,074,021
Number of Sequences: 37544
Number of extensions: 247702
Number of successful extensions: 498
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)