Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M03
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   2.6  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   3.5  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    26   3.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   6.1  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    25   6.1  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   8.0  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    25   8.0  

>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -2

Query: 285  VIFHKPTLNIYLYIKIEYLDLLKICTYANMSITLCKIF*K*SIRNFRLAIFTK 127
            V+  + T N Y + ++EYL + ++     + I+L K F + S+RN  L  F +
Sbjct: 904  VLLKRETPNYYCFAQMEYLTVTEVKMLNVLMISLSK-FIRNSLRNSGLMDFVR 955


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 13  FDASKLDTMWHDFHHMLSSGGNPVWHQNPTTLLKI 117
           +D  +LDTMW  +++      N  W       L+I
Sbjct: 131 YDLDELDTMWLTYYNEFQLSSNSEWENVSKEFLEI 165


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 28  LDTMWHDFHHMLSSGGNPV-WHQNPTTLL 111
           LDT+W   HH   S G PV W Q  T ++
Sbjct: 126 LDTVWEKIHH--DSTGKPVSWSQYNTIIV 152


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 399  EFKFPFNTKVGRNVKPNKSVIPDDNSLPFDN 307
            E+    + ++ R + P + +IP+D ++ FDN
Sbjct: 1016 EYMIGEDPELTRKISPVEGIIPEDANVRFDN 1046


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -1

Query: 244 KD*VS*FTKNMHVCKYEYNVV*NFLKMIDKELQISDFYQTNSQ 116
           K  +S FTK      Y+  ++ +FLK I+++++  + + + SQ
Sbjct: 135 KSFLSEFTKRRWTVNYQVKLIRDFLKFINEKIEQYEPWASGSQ 177


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 19  ASKLDTMWHDFH-HMLSSGGN 78
           A+ LDT W+ FH  +L+SGG+
Sbjct: 82  AAVLDTDWNPFHDQVLASGGD 102


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 285 QIFIYINYCQKVNCCHRVL 341
           QI   + YC K++ CHR L
Sbjct: 116 QILCGLEYCHKLHICHRDL 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,011
Number of Sequences: 5004
Number of extensions: 48977
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)