Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_M03
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    30   1.4  
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    30   1.4  
Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin receptor
            protein 2 protein.
          Length = 1338

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +2

Query: 20   HRNLILCGMIFTICLVVVVIQSGTKTLPPF*KLTVSLVKIANLKFLIDHF-*KILHNVIL 196
            HRNL LC +I  +  V+ + ++G +T          +V I    F +  F   +L    L
Sbjct: 933  HRNLCLCLLIAELVFVIGMDRTGNRT-------GCGVVAILLHYFFLSSFCWMLLEGYQL 985

Query: 197  IFAYVHIFSKSRYSIFIYKYMFNVG 271
                + +F  +R  IF+Y Y+F  G
Sbjct: 986  YMMLIQVFEPNRTRIFLY-YLFCYG 1009


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
            protein LAT-2 protein.
          Length = 1338

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +2

Query: 20   HRNLILCGMIFTICLVVVVIQSGTKTLPPF*KLTVSLVKIANLKFLIDHF-*KILHNVIL 196
            HRNL LC +I  +  V+ + ++G +T          +V I    F +  F   +L    L
Sbjct: 933  HRNLCLCLLIAELVFVIGMDRTGNRT-------GCGVVAILLHYFFLSSFCWMLLEGYQL 985

Query: 197  IFAYVHIFSKSRYSIFIYKYMFNVG 271
                + +F  +R  IF+Y Y+F  G
Sbjct: 986  YMMLIQVFEPNRTRIFLY-YLFCYG 1009


>Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical
           protein W07G1.2 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 22/70 (31%), Positives = 38/70 (54%)
 Frame = -2

Query: 381 NTKVGRNVKPNKSVIPDDNSLPFDNNLYI*IFVIFHKPTLNIYLYIKIEYLDLLKICTYA 202
           N+   R + P  +V+ D     F +N+Y+ ++ IFH   L +Y  +K  Y+  LKI  + 
Sbjct: 7   NSSYFRVLTPT-TVLHDHRLRGFPDNIYLIVYGIFH--LLIMYFVLKCAYI-CLKIRVF- 61

Query: 201 NMSITLCKIF 172
           + ++T C IF
Sbjct: 62  HWNLT-CLIF 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,885,910
Number of Sequences: 27780
Number of extensions: 262871
Number of successful extensions: 592
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)